Only getting the help screen when trying to run

[ka738059]

Hello, I am having trouble running this program. I just keeping getting the output that explains how to run the program. I am using the usage command provided:

USAGE:path/run.driverml.sh -w <path to the program> -i <input file> -f <reference genome> -p <prior file> [options]

        Required Arguments:

        -w/--pathway                    The path to the program.

        -i/--input                      The input mutation data file which is in Mutation Annotation Format (MAF). The MAF specifications could
                                        be seen on the manual of this application or NCI Wiki.

        -f/--reference_file             The human reference genome file for input data.

        -r/--reference_training         The human reference genome file for training data.

[HelloYiHan]

Hi, I'm sorry for my late reply.
You should add your own parameters. For example, nohup /AbsolutePath/DriverML-master/run.driverml.sh -w /AbsolutePath/DriverML-master -i example/UVM.txt -f /AbsolutePath/GRCh38.fa -r /AbsolutePath/hg19.fa -m 10 -o UVM-summary.txt > UVM-nohup.out. You need to replace the AbsolutePath with the path on your machine.

Best,
Yi Han