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How to run DriverML properly? #4

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Gandalfy opened this issue Jul 15, 2019 · 1 comment
Open

How to run DriverML properly? #4

Gandalfy opened this issue Jul 15, 2019 · 1 comment

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@Gandalfy
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Gandalfy commented Jul 15, 2019

Hi,

Thanks a lot for the contribution to DriverML, which is an amazing algorithm to determine driver mutations, but I met some fatal problems when running it.

Following the manual introduced by github (https://github.com/HelloYiHan/DriverML) , it seems that I triumphantly installed DriverML in my macOS Mojave10.14.4. However, when I tested the example, nothing came out. Whatever paramters I tried, even run.driverml.sh -v or -h, there is no error message, no version information but always an unwavering instruction page starting by:

This is a free application used for identifying cancer driver genes.
USAGE:....

And I also tried the cmd exactly descripbed in the website, which is

nohup /Users/jianga/Desktop/xlu/tools/DriverML-master/run.driverml.sh -w /Users/jianga/Desktop/xlu/tools/DriverML-master -i /Users/jianga/Desktop/xlu/tools/DriverML-master/example/UVM.txt -f /Users/jianga/Desktop/xlu/reference/genome/hg38/hg38.fa -r /Users/jianga/Desktop/xlu/reference/genome/hg19/hg19.fa -c 1 -o /Users/jianga/Desktop/xlu/tools/DriverML-master/UVM-summary.txt > UVM-nohup.txt 

I could only get a UVM-nohup.txt under the dictionary but also and only stored the instruction page mentioned above.

Thus, could you please help me with this issue, and pointing out what's wrong with my code or how to fix it.

Many thanks advanced and I am looking forward to your kind and timely response.

@HelloYiHan
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Hi Gandalfy,

We are very glad that you use DriverML. Maybe you need to run it on a Linux device because we only tested the code on the Linux system.

Let me know if you have any other questions or concerns.

Best,
Yi Han

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