for a demo of the class, see the vignette
for visualization capabilites, see
SpatialData.plot
for data reading/writing and examples, see
SpatialData.data
SpatialData provides an interface to Python's SpatialData, and currently includes:
- reticulate-based use of
spatialdata-iofor reading of manufacturer data and writing to .zarr - on-disk representation of images/labels as
ZarrArrays (Rarr) and shapes/points asarrowobjects - method drafts for visualization and coordinate system handling
In addition, scverse data examples have been made available through
Bioconductor's NSF OSN bucket, are accessible from within R, and BiocFileCached;
there's also an interface to aligning data into a common (identity) space.
BiocManager::install("HelenaLC/SpatialData")