From 9ceb7fce90c6c1aa3357ca2462a2f83d4298e3ad Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Hadrien=20Gourl=C3=A9?= Date: Mon, 3 May 2021 21:43:03 +0200 Subject: [PATCH] fix for #202 --- iss/download.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/iss/download.py b/iss/download.py index 08d0242..a611753 100644 --- a/iss/download.py +++ b/iss/download.py @@ -48,7 +48,8 @@ def ncbi(kingdom, n_genomes, output): genome_info = Entrez.read( Entrez.esummary( db='assembly', - id=ident))["DocumentSummarySet"]["DocumentSummary"][0] + id=ident), + validate=False)["DocumentSummarySet"]["DocumentSummary"][0] if genome_info['FtpPath_RefSeq']: url = genome_info['FtpPath_RefSeq'] url = "%s/%s_%s_genomic.fna.gz" \