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Upon further review, there may be two general patterns of "pairs with a method". See additional comments below. Here is one worked example:
biocide:
annotations:
Expected_value: name;name;timestampdescription: List of biocides (commercial name of product and supplier) and date of administrationtitle: biocide administrationexamples:
- value: ALPHA 1427;Baker Hughes;2008-01-23keywords:
- administrationstring_serialization: '{text};{text};{timestamp}'slot_uri: MIXS:0001011recommended: truebiocide_admin_method:
annotations:
Expected_value: measurement value;frequency;duration;durationPreferred_unit: milligram per literdescription: Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)title: biocide administration methodkeywords:
- administration
- methodstring_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}'slot_uri: MIXS:0000456recommended: true
vs
cur_vegetation:
annotations:
Expected_value: current vegetation typedescription: Vegetation classification from one or more standard classification systems, or agricultural croptitle: current vegetationkeywords:
- vegetationrange: stringslot_uri: MIXS:0000312cur_vegetation_meth:
description: Reference or method used in vegetation classificationtitle: current vegetation methodkeywords:
- method
- vegetationslot_uri: MIXS:0000314range: stringpattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$structured_pattern:
syntax: ^{PMID}|{DOI}|{URL}$interpolated: truepartial_match: true
The text was updated successfully, but these errors were encountered:
This list only concerns slots with "meth" in their names. There are additional slots whose description mention "method".
method citations
al_sat_meth
cur_vegetation_meth
heavy_metals_meth
horizon_meth
local_class_meth
micro_biomass_meth
ph_meth
photosynt_activ_meth
prev_land_use_meth
samp_collect_method
soil_texture_meth
soil_type_meth
tot_org_c_meth
water_cont_soil_meth
method descriptions:
add_recov_method
anim_water_method
biocide_admin_method
chem_treat_method
plant_water_method
sim_search_meth
urine_collect_meth
unclear (minimally elaborated string ranges)
alkalinity_method (example = titration)
heat_sys_deliv_meth (example = radiant)
samp_sort_meth no example or pattern
sc_lysis_method (example = ambion single cell lysis kit)
urine_collect_meth (example = catheter)
ontology term range
seq_meth
turbomam
changed the title
biocide and biocide_admin_method are inconsistent with other term pairs where one is about the method by which the other was determinedbiocide and biocide_admin_method illustrate inconsistent modelling with paired method slots
Dec 18, 2024
Upon further review, there may be two general patterns of "pairs with a method". See additional comments below. Here is one worked example:
vs
The text was updated successfully, but these errors were encountered: