Merge pull request #4 from ilijana88/MQ-GCM2.0

MQ-GCM2.0

Author: AndyHoggANU

.DS_Store

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+Folder MQGCM_FINAL: MQGCM files, including new config file (make.config) and the new parameter file (input.params).
+
+Instructions:
+
+(A) Substitute all of the q-gcm source code with the updated files from here. 
+
+(B) In make.config: (i) Choose NCOPT and MOI options (if wanted). (ii) If MOI is activated, choose DLAT option; otherwise (for dry model), uncheck the DLAT option. (iii) Choose TMPF (temperature feedback) and PCOU (partial coupling) options, as necessary. 
+
+(C) Compile the code using Makefile. 
+
+(D) Start from initial conditions in the corresponding lastday.nc files (In the folder LASTDAY, for dry (DQGCM) and moist (MQGCM) model versions).

MQ-GCM/0README

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+#
+# Q-GCM Makefile v1.5.0
+# =====================
+#
+# This Makefile contains the dependencies within the code,
+# and the instructions for building the data modules, the main
+# model and the various related utility/testing programs.
+#
+# Model configuration options applied by the preprocessor
+# are now included via "make.config", which should be
+# linked to a file specifying the configuration required
+#
+# Machine-specific details are now included via "make.macro", which
+# should be linked to a file appropriate to the system being used,
+# including details of the compiler and its flags, and the locations
+# of the required software libraries: LAPACK/BLAS and netCDF
+
+include make.config
+
+include make.macro
+
+# Order of dependencies: source file (+ any other *.f/*.F files or code segments
+# incorporated via an INCLUDE statement), then this Makefile, the make.config
+# file and the system-specific make.macro, parameters.mod, then any other
+# modules referenced, then the netcdf.inc file (if relevant), then source
+# code of any routines called by the (sub)programs in the source file.
+# It might be desirable to (eventually) automate this using the "makedepend" utility
+
+MAKEFILE = Makefile make.config make.macro
+
+MODS =  parameters.mod atconst.mod occonst.mod athomog.mod ochomog.mod \
+	atstate.mod ocstate.mod intrfac.mod radiate.mod timinfo.mod \
+	monitor.mod qgasubs.mod atisubs.mod omlsubs.mod \
+	qgosubs.mod ocisubs.mod conhoms.mod vorsubs.mod xfosubs.mod amlsubs.mod\
+	valsubs.mod nc_subs.mod hra_out.mod radsubs.mod topsubs.mod intsubs.mod \
+	eigmode.mod areasubs.mod covaria.mod mondiag.mod qocdiag.mod timavge.mod
+
+SRCS =	parameters_data.F q-gcm.F atconst_data.F occonst_data.F \
+	athomog_data.F ochomog_data.F atstate_data.F ocstate_data.F \
+	intrfac_data.F radiate_data.F timinfo_data.F monitor_data.F \
+	nc_subs.F hra_out.F areasubs_diag.F covaria_diag.F monitor_diag.F \
+        qocdiag.F timavge.F conhoms.F vorsubs.F \
+	xfosubs.F valsubs.F radsubs.f intsubs.f fftsubs.f \
+	omlsubs.F qgosubs.F ocisubs.F topsubs.F \
+	amlsubs.F qgasubs.F atisubs.F eigmode.f ${LAPSRC}
+
+OBJS =  parameters_data.o q-gcm.o atconst_data.o occonst_data.o \
+	athomog_data.o ochomog_data.o atstate_data.o ocstate_data.o \
+	intrfac_data.o radiate_data.o timinfo_data.o monitor_data.o \
+	nc_subs.o hra_out.o areasubs_diag.o covaria_diag.o monitor_diag.o \
+        qocdiag.o timavge.o conhoms.o vorsubs.o \
+	xfosubs.o valsubs.o radsubs.o intsubs.o fftsubs.o \
+	omlsubs.o qgosubs.o ocisubs.o topsubs.o \
+	amlsubs.o qgasubs.o atisubs.o eigmode.o ${LAPOBJ}
+
+q-gcm: ${MODS} ${OBJS}
+	${FC} ${FFLAGS} -o q-gcm ${OBJS} ${LAPACK} ${NCLINK}
+
+# Modules:
+# ========
+parameters.mod: parameters_data.F ${MAKEFILE}
+	${FC} ${FFLAGS} -c parameters_data.F
+# Need to permit 80 character lines to allow for explanatory inline comments
+# Add this to the FFLAGS for each compiler, as the
+# option syntax for this varies between compilers
+
+# Data (storage) modules:
+# -----------------------
+# Make these first as they have fewest dependencies,
+# but many of the program modules depend on them
+
+atconst.mod: atconst_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c atconst_data.F
+
+occonst.mod: occonst_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c occonst_data.F
+
+athomog.mod: athomog_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c athomog_data.F
+
+ochomog.mod: ochomog_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c ochomog_data.F
+
+atstate.mod: atstate_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c atstate_data.F
+
+ocstate.mod: ocstate_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c ocstate_data.F
+
+intrfac.mod: intrfac_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c intrfac_data.F
+
+radiate.mod: radiate_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} -c radiate_data.F
+
+timinfo.mod: timinfo_data.F ${MAKEFILE}
+	${FC} ${FFLAGS} ${QGOPTS} -c timinfo_data.F
+
+monitor.mod: monitor_data.F ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} -c monitor_data.F
+
+# (Mainly) program modules:
+# -------------------------
+
+qgasubs.mod: qgasubs.F ${MAKEFILE} parameters.mod \
+	atconst.mod athomog.mod atstate.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c qgasubs.F
+
+atisubs.mod: atisubs.F ${MAKEFILE} parameters.mod \
+	atconst.mod athomog.mod atstate.mod monitor.mod intsubs.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c atisubs.F
+
+omlsubs.mod: omlsubs.F ${MAKEFILE} parameters.mod \
+	occonst.mod ochomog.mod ocstate.mod intrfac.mod \
+	radiate.mod monitor.mod intsubs.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c omlsubs.F
+
+qgosubs.mod: qgosubs.F ${MAKEFILE} parameters.mod \
+	occonst.mod ochomog.mod ocstate.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c qgosubs.F
+
+ocisubs.mod: ocisubs.F ${MAKEFILE} parameters.mod \
+	occonst.mod ochomog.mod ocstate.mod monitor.mod intsubs.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c ocisubs.F
+
+conhoms.mod: conhoms.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod athomog.mod ochomog.mod \
+	atstate.mod ocstate.mod monitor.mod intsubs.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c conhoms.F
+
+vorsubs.mod: vorsubs.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c vorsubs.F
+
+xfosubs.mod: xfosubs.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod athomog.mod ochomog.mod atstate.mod \
+	ocstate.mod intrfac.mod radiate.mod monitor.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c xfosubs.F
+
+amlsubs.mod: amlsubs.F ${MAKEFILE} parameters.mod \
+	atconst.mod athomog.mod atstate.mod intrfac.mod \
+	radiate.mod monitor.mod intsubs.mod xfosubs.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c amlsubs.F
+
+valsubs.mod: valsubs.F ${MAKEFILE} parameters.mod \
+	atstate.mod occonst.mod ocstate.mod intrfac.mod
+	${FC} ${FFLAGS} ${QGOPTS} -c valsubs.F
+
+radsubs.mod: radsubs.f ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod intrfac.mod radiate.mod xfosubs.mod
+	${FC} ${FFLAGS} -c radsubs.f
+
+intsubs.mod: intsubs.f ${MAKEFILE}
+	${FC} ${FFLAGS} -c intsubs.f
+
+eigmode.mod: eigmode.f ${MAKEFILE} parameters.mod
+	${FC} ${FFLAGS} -c eigmode.f
+
+nc_subs.mod: nc_subs.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod timinfo.mod \
+	atstate.mod ocstate.mod intrfac.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c nc_subs.F
+
+hra_out.mod: hra_out.F ${MAKEFILE} parameters.mod \
+	atconst.mod timinfo.mod \
+	atstate.mod nc_subs.mod intrfac.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c hra_out.F
+
+topsubs.mod: topsubs.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod intsubs.mod nc_subs.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c topsubs.F
+
+areasubs.mod: areasubs_diag.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod timinfo.mod intrfac.mod \
+	nc_subs.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c areasubs_diag.F
+
+covaria.mod: covaria_diag.F ${MAKEFILE} parameters.mod \
+	atstate.mod ocstate.mod intrfac.mod nc_subs.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c covaria_diag.F
+
+mondiag.mod: monitor_diag.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod atstate.mod ocstate.mod \
+	intrfac.mod radiate.mod timinfo.mod monitor.mod \
+	nc_subs.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c monitor_diag.F
+
+qocdiag.mod: qocdiag.F ${MAKEFILE} parameters.mod \
+	occonst.mod ocstate.mod timinfo.mod nc_subs.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c qocdiag.F
+
+timavge.mod: timavge.F ${MAKEFILE} parameters.mod \
+	atconst.mod occonst.mod atstate.mod ocstate.mod \
+	intrfac.mod nc_subs.mod ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c timavge.F
+
+# Object files:
+# -------------
+# Keep the library routines as objects rather thatn modules for
+# ease of swapping between the library and source versions of
+# LAPACK/BLAS, and for possible change of FFT package to FFTW
+
+q-gcm.o: q-gcm.F in_param.f out_param.f \
+	${MAKEFILE} ${MODS} ${NCDINC}
+	${FC} ${FFLAGS} ${QGOPTS} ${NCINCL} -c q-gcm.F
+
+fftsubs.o: fftsubs.f ${MAKEFILE}
+	${FC} ${FFLAGS} -c fftsubs.f
+
+lasubs.o: lasubs.f ${MAKEFILE}
+	${FC} ${FFLAGS} -c -o lasubs.o lasubs.f
+# Need to permit 80 character lines when getting LAPACK/BLAS from lasubs.f
+# Add this to the FFLAGS for each compiler, as the
+# option syntax for this varies between compilers
+
+fullprog.F: ${SRCS}
+	cat ${SRCS} > fullprog.F
+
+# Compile test programs with compiler options ${TPFLAGS}
+# Normally use the default (vanilla) options, by not setting TPFLAGS
+# Can also use ${FFLAGS}, which are usually chosen for optimisation
+# May sometimes want the ${DEBUGS} options, of course
+# Note that when building straight from source files in this way,
+# the files need to be ordered consistently with any dependencies
+
+eigtest: eigtest.f in_param.f ${MAKEFILE} parameters_data.F atconst_data.F \
+	occonst_data.F intrfac_data.F radiate_data.F eigmode.f
+	${FC} ${TPFLAGS} -o eigtest parameters_data.F atconst_data.F \
+        occonst_data.F intrfac_data.F radiate_data.F eigmode.f \
+        eigtest.f ${LAPSRC} ${LAPACK}
+
+radtest: radtest.f in_param.f ${MAKEFILE} parameters_data.F \
+	atconst_data.F occonst_data.F athomog_data.F ochomog_data.F \
+	atstate_data.F ocstate_data.F intrfac_data.F monitor_data.F \
+	radiate_data.F xfosubs.F radsubs.f
+	${FC} ${TPFLAGS} ${QGOPTS} -o radtest parameters_data.F \
+        atconst_data.F occonst_data.F athomog_data.F ochomog_data.F \
+        atstate_data.F ocstate_data.F intrfac_data.F monitor_data.F \
+        radiate_data.F xfosubs.F radsubs.f radtest.f ${LAPSRC} ${LAPACK}
+
+toptest: toptest.F ${MAKEFILE} parameters_data.F atconst_data.F \
+	occonst_data.F atstate_data.F ocstate_data.F intrfac_data.F \
+	timinfo_data.F intsubs.f eigmode.f nc_subs.F ${NCDINC} topsubs.F
+	${FC} ${TPFLAGS} ${QGOPTS} ${NCINCL} -o toptest parameters_data.F \
+	atconst_data.F occonst_data.F atstate_data.F ocstate_data.F \
+	intrfac_data.F timinfo_data.F nc_subs.F intsubs.f \
+	eigmode.f topsubs.F toptest.F ${LAPSRC} ${LAPACK} ${NCLINK}
+
+xfotest: xfotest.F in_param.f ${MAKEFILE} parameters_data.F \
+	atconst_data.F occonst_data.F athomog_data.F ochomog_data.F \
+	atstate_data.F ocstate_data.F intrfac_data.F radiate_data.F \
+	timinfo_data.F monitor_data.F nc_subs.F eigmode.f \
+	${NCDINC} xfosubs.F topsubs.F radsubs.f intsubs.f
+	${FC} ${TPFLAGS} ${QGOPTS} ${NCINCL} -o xfotest parameters_data.F \
+        atconst_data.F occonst_data.F athomog_data.F ochomog_data.F \
+        atstate_data.F ocstate_data.F intrfac_data.F radiate_data.F \
+        timinfo_data.F monitor_data.F nc_subs.F xfosubs.F \
+	topsubs.F radsubs.f intsubs.f eigmode.f \
+	xfotest.F ${LAPSRC} ${LAPACK} ${NCLINK}
+
+EXECS = eigtest radtest toptest xfotest q-gcm
+INTERMEDIATES = *.mod *.o *.l *.lst *__genmod.* *.list *.chek
+
+clean:
+	rm -f ${INTERMEDIATES} ${EXECS}
+
+tidy:
+	rm -f ${INTERMEDIATES}