diff --git a/bio/gatk3/realignertargetcreator/environment.linux-64.pin.txt b/bio/gatk3/realignertargetcreator/environment.linux-64.pin.txt
index 4580248a49..176fe6c80d 100644
--- a/bio/gatk3/realignertargetcreator/environment.linux-64.pin.txt
+++ b/bio/gatk3/realignertargetcreator/environment.linux-64.pin.txt
@@ -8,45 +8,44 @@ https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca05
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+https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-8.4.0-h3d44ed6_0.conda#27f46291a6aaa3c2a4f798ebd35a7ddb
+https://conda.anaconda.org/conda-forge/linux-64/pango-1.52.2-ha41ecd1_0.conda#a658eeabf188c3040da36b0763de2bfd
+https://conda.anaconda.org/conda-forge/linux-64/r-base-4.3.3-hf0d99cb_1.conda#f8ee712096aa7cedd3eb8d19ade82374
 https://conda.anaconda.org/conda-forge/linux-64/r-bitops-1.0_7-r43h57805ef_2.conda#0aa0283ccd0b3906b2282cb1a6f59a63
 https://conda.anaconda.org/conda-forge/linux-64/r-cli-3.6.2-r43ha503ecb_0.conda#7a325f68b1354c1a5261688b5e54d008
 https://conda.anaconda.org/conda-forge/linux-64/r-colorspace-2.1_0-r43h57805ef_1.conda#22117ffc4b380dba0732166eec62d8cb
@@ -112,7 +111,7 @@ https://conda.anaconda.org/conda-forge/linux-64/r-gtools-3.9.5-r43h57805ef_0.con
 https://conda.anaconda.org/conda-forge/linux-64/r-isoband-0.2.7-r43ha503ecb_2.conda#6db3b5f97166c8b0fd8c995fbe32c89d
 https://conda.anaconda.org/conda-forge/linux-64/r-kernsmooth-2.23_22-r43h13b3f57_0.conda#d0b0a94110edd9b36dd4203bcd189f8b
 https://conda.anaconda.org/conda-forge/noarch/r-labeling-0.4.3-r43hc72bb7e_0.conda#8d5f7d07433437c48c1c497ec8c77aec
-https://conda.anaconda.org/conda-forge/linux-64/r-lattice-0.22_5-r43h57805ef_0.conda#52bf3ca46933503df0c763469c130b70
+https://conda.anaconda.org/conda-forge/linux-64/r-lattice-0.22_6-r43h57805ef_0.conda#748c702a5c6c89f9794d148bdcbbdfbc
 https://conda.anaconda.org/conda-forge/linux-64/r-magrittr-2.0.3-r43h57805ef_2.conda#7b04cb810f47eb12efc2e9be5f8ca1f1
 https://conda.anaconda.org/conda-forge/linux-64/r-mass-7.3_60-r43h57805ef_1.conda#be049620c8ceefdb69a24db0c1919c85
 https://conda.anaconda.org/conda-forge/noarch/r-pkgconfig-2.0.3-r43hc72bb7e_3.conda#8978eef741fffaa48be070693a17f42f
@@ -127,16 +126,16 @@ https://conda.anaconda.org/conda-forge/linux-64/r-catools-1.18.2-r43ha503ecb_2.c
 https://conda.anaconda.org/conda-forge/linux-64/r-ellipsis-0.3.2-r43h57805ef_2.conda#10c5892991072cfa3a61489d2ac6ad66
 https://conda.anaconda.org/conda-forge/noarch/r-lifecycle-1.0.4-r43hc72bb7e_0.conda#291d2fb68ea1b181644b40d6743ae000
 https://conda.anaconda.org/conda-forge/linux-64/r-matrix-1.6_5-r43h316c678_0.conda#8146ef1b3c54e1a484822085d39357b0
-https://conda.anaconda.org/conda-forge/noarch/r-munsell-0.5.0-r43hc72bb7e_1006.conda#22f529a11473af44bbe5d481bef9008d
+https://conda.anaconda.org/conda-forge/noarch/r-munsell-0.5.1-r43hc72bb7e_0.conda#2f189c59532c130f4b83e4a50626c08b
 https://conda.anaconda.org/conda-forge/linux-64/r-nlme-3.1_164-r43h61816a4_0.conda#7f44f44332abf00df114c685b1d6054c
 https://conda.anaconda.org/conda-forge/linux-64/r-plyr-1.8.9-r43ha503ecb_0.conda#47bf330a88b5a59bc6e110624f1b8e7a
 https://conda.anaconda.org/conda-forge/noarch/r-gplots-3.1.3.1-r43hc72bb7e_0.conda#c9500a17036a878751066fbcda28ad66
-https://conda.anaconda.org/conda-forge/noarch/r-gtable-0.3.4-r43hc72bb7e_0.conda#11c5e5e3bd2b41005177c28c1ba46dc3
+https://conda.anaconda.org/conda-forge/noarch/r-gtable-0.3.5-r43hc72bb7e_0.conda#4afa6b3bc18ef585bac26420528ed1de
 https://conda.anaconda.org/conda-forge/linux-64/r-mgcv-1.9_1-r43h316c678_0.conda#c73d9ed0dc98182d712cbea33a3e5d59
 https://conda.anaconda.org/conda-forge/linux-64/r-reshape-0.8.9-r43hc72bb7e_2.conda#e24945cba9c156cf4e7154b3857f416d
 https://conda.anaconda.org/conda-forge/noarch/r-scales-1.3.0-r43hc72bb7e_0.conda#508360956e18c2b0cc18968cdb786c78
 https://conda.anaconda.org/conda-forge/linux-64/r-vctrs-0.6.5-r43ha503ecb_0.conda#e398bd0451e6350a876a8561f8e90682
 https://conda.anaconda.org/conda-forge/noarch/r-pillar-1.9.0-r43hc72bb7e_1.conda#7cff01456566a69381d3907d520c10b2
 https://conda.anaconda.org/conda-forge/linux-64/r-tibble-3.2.1-r43h57805ef_2.conda#afa7d3f21fbc5a2fbaa48cb9bacb7bce
-https://conda.anaconda.org/conda-forge/noarch/r-ggplot2-3.5.0-r43hc72bb7e_0.conda#f5fc39155735cfc3c0c680620301dfa8
-https://conda.anaconda.org/bioconda/noarch/gatk-3.8-hdfd78af_11.tar.bz2#7827b3c102797aa2da90b1bb525ba5b4
+https://conda.anaconda.org/conda-forge/noarch/r-ggplot2-3.5.1-r43hc72bb7e_0.conda#efb6b27dba202d74e5f182faae28794a
+https://conda.anaconda.org/bioconda/noarch/gatk-3.8-hdfd78af_12.tar.bz2#ce94fe85517155af78e62d1412785d7e
diff --git a/bio/gatk3/realignertargetcreator/environment.yaml b/bio/gatk3/realignertargetcreator/environment.yaml
index c442f1d929..5433f23a51 100644
--- a/bio/gatk3/realignertargetcreator/environment.yaml
+++ b/bio/gatk3/realignertargetcreator/environment.yaml
@@ -4,5 +4,5 @@ channels:
   - nodefaults
 dependencies:
   - gatk =3.8
-  - python =3.12.2
+  - python =3.12.3
   - snakemake-wrapper-utils =0.6.2