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Identify proteomics Minimum Information #31

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mcourtot opened this issue Jul 10, 2019 · 3 comments
Open

Identify proteomics Minimum Information #31

mcourtot opened this issue Jul 10, 2019 · 3 comments
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@proccaserra @ulo @sedlyarov @FuqiX
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Resolute Issue associated with RESOLUTE project Task 2.1 Workflow
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F2F meeting Janua...

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@mcourtot
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Is there an existing MI for proteomics data that we can assess resolute against? Goal is to provide a wish list metadata for upcoming datasets
@mcourtot mcourtot added Resolute Issue associated with RESOLUTE project Workflow labels Jul 10, 2019
@mcourtot mcourtot added this to the F2F meeting October 2019 milestone Jul 10, 2019
@FuqiX FuqiX self-assigned this Sep 18, 2019
@mcourtot
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Check ontology recommendation (eg Brenda mentioned by @proccaserra)

@proccaserra
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proccaserra commented Oct 16, 2019 •
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@sedlyarov @mcourtot @FuqiX
https://www.ebi.ac.uk/pride/help/archive/submission/pridexml

Section 6: Recommendations on Ontology Use -> PRIDE requires BRENDA for annotation Source/specimen describe which differs from ArrayExpress or ENA (EFO, free text respectively)

TODO: Documenting Requirements and Use case: Ontology Mapping BRENDA <-> EFO
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@FuqiX
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FuqiX commented Jan 15, 2020

@ulo and @sedlyarov submitted the proteomics dataset to Proteomexchange/PRIDE with right format and annotation. Links will be added later

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@proccaserra proccaserra

@ulo ulo

@sedlyarov sedlyarov

@FuqiX FuqiX

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Resolute Issue associated with RESOLUTE project Task 2.1 Workflow
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F2F meeting January 2020 Hinxton
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@proccaserra @ulo @mcourtot @sedlyarov @FuqiX