From 3579f2059440c042eb08148e24dd43aa1ea40d86 Mon Sep 17 00:00:00 2001 From: EdmundGoodman Date: Sat, 17 Feb 2024 19:00:22 +0000 Subject: [PATCH] Switch to using ruamel YAML parser --- TODO.md | 2 +- poetry.lock | 26 +++++++++++++------------- pyproject.toml | 3 +-- src/hpc_multibench/yaml_model.py | 6 +++--- 4 files changed, 18 insertions(+), 19 deletions(-) diff --git a/TODO.md b/TODO.md index 79d1ee7..faaf484 100644 --- a/TODO.md +++ b/TODO.md @@ -5,7 +5,7 @@ - [x] Generate sbatch files from YAML - [ ] Improvements - [ ] Results analysis - - [ ] Result aggregation + - [x] Result aggregation - [ ] Result analysis - [ ] Statistical re-runs - [ ] YAML schema diff --git a/poetry.lock b/poetry.lock index c94a5d0..2dd9d24 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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PyYAML" -optional = false -python-versions = "*" -files = [ - {file = "types-PyYAML-6.0.12.12.tar.gz", hash = "sha256:334373d392fde0fdf95af5c3f1661885fa10c52167b14593eb856289e1855062"}, - {file = "types_PyYAML-6.0.12.12-py3-none-any.whl", hash = "sha256:c05bc6c158facb0676674b7f11fe3960db4f389718e19e62bd2b84d6205cfd24"}, -] - [[package]] name = "typing-extensions" version = "4.9.0" @@ -1531,4 +1531,4 @@ watchmedo = ["PyYAML (>=3.10)"] [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "15a3a7afb33733a5244fae59e10c25e5d5aef888f89650d64664b65d0604c2e2" +content-hash = "101f95633334f103c44301eeed33de66e4895baf909838f6cc89cb51ae3bf6ca" diff --git a/pyproject.toml b/pyproject.toml index bcf661b..21bcaea 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,9 +14,8 @@ build-backend = "poetry.core.masonry.api" [tool.poetry.dependencies] python = "^3.10" -pyyaml = "^6.0.1" pydantic = "^2.6.1" -types-pyyaml = "^6.0.12.12" +ruamel-yaml = "^0.18.6" [tool.poetry.group.dev.dependencies] black = "^23.7.0" diff --git a/src/hpc_multibench/yaml_model.py b/src/hpc_multibench/yaml_model.py index 265d97a..7569197 100644 --- a/src/hpc_multibench/yaml_model.py +++ b/src/hpc_multibench/yaml_model.py @@ -20,7 +20,8 @@ class Defaults(BaseModel): from re import search as re_search from typing import Any, Self -import yaml +# from yaml import safe_load +from ruamel.yaml import YAML from pydantic import BaseModel from hpc_multibench.configuration import RunConfiguration @@ -140,8 +141,7 @@ class TestPlan(BaseModel): def from_yaml(cls, file: Path) -> Self: """Construct the model from a YAML file.""" with file.open(encoding="utf-8") as handle: - data = yaml.safe_load(handle) - return cls(**data) + return cls(**YAML(typ="safe").load(handle)) def run(self) -> None: """."""