DESCRIPTION

Package: epiwraps
Type: Package
Title: epiwraps: Wrappers for plotting and dealing with epigenomics data
Version: 0.99.107
Date: 2025-03-03
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", 
            role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Emanuel", "Sonder", email="emanuel.sonder@hest.ethz.ch", role="aut"))
Depends:
    R (>= 4.0),
    SummarizedExperiment,
    GenomicRanges,
    EnrichedHeatmap
Imports:
    IRanges,
    data.table,
    BiocParallel,
    GenomeInfoDb,
    GenomicAlignments,
    GenomicFiles,
    Rsamtools,
    rtracklayer,
    ComplexHeatmap,
    S4Vectors,
    grid,
    Rsamtools,
    Gviz,
    ensembldb,
    AnnotationFilter,
    matrixStats,
    circlize,
    viridisLite,
    ggplot2,
    cowplot,
    edgeR,
    dplyr,
    stats,
    pbapply,
    methods,
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle,
    UpSetR,
    magick,
    testthat (>= 3.0.0)
Description:
    A set of wrappers to facilitate working with epigenomics data.
    Includes in particular wrappers for producing multitrack single-regions plots,
    enrichment heatmaps, bigwig generation, normalization, etc. The focus was 
    put on a simple yet flexible interface.
License: GPL-3
VignetteBuilder: knitr
Encoding: UTF-8
Config/testthat/edition: 3
RoxygenNote: 7.2.3
URL: https://ethz-ins.github.io/epiwraps/
BiocViews: Epigenetics, GeneRegulation, Visualization