.all-contributorsrc

@@ -0,0 +1,110 @@
+{
+  "files": [
+    "README.md"
+  ],
+  "imageSize": 100,
+  "commit": false,
+  "contributors": [
+    {
+      "login": "EiffL",
+      "name": "Francois Lanusse",
+      "avatar_url": "https://avatars0.githubusercontent.com/u/861591?v=4",
+      "profile": "http://flanusse.net",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "santiagocasas",
+      "name": "Santiago Casas",
+      "avatar_url": "https://avatars0.githubusercontent.com/u/6987716?v=4",
+      "profile": "http://www.cosmostat.org/people/santiago-casas",
+      "contributions": [
+        "bug",
+        "code"
+      ]
+    },
+    {
+      "login": "austinpeel",
+      "name": "Austin Peel",
+      "avatar_url": "https://avatars0.githubusercontent.com/u/17024310?v=4",
+      "profile": "https://github.com/austinpeel",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "minaskar",
+      "name": "Minas Karamanis",
+      "avatar_url": "https://avatars2.githubusercontent.com/u/23280751?v=4",
+      "profile": "https://minaskaramanis.com",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "dkirkby",
+      "name": "David Kirkby",
+      "avatar_url": "https://avatars1.githubusercontent.com/u/185007?v=4",
+      "profile": "https://faculty.sites.uci.edu/dkirkby/",
+      "contributions": [
+        "code",
+        "bug"
+      ]
+    },
+    {
+      "login": "aboucaud",
+      "name": "Alexandre Boucaud",
+      "avatar_url": "https://avatars0.githubusercontent.com/u/3065310?v=4",
+      "profile": "https://aboucaud.github.io",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "dlanzieri",
+      "name": "Denise Lanzieri",
+      "avatar_url": "https://avatars.githubusercontent.com/u/72620117?v=4",
+      "profile": "https://www.cosmostat.org/people/denise-lanzieri",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "jecampagne",
+      "name": "jecampagne",
+      "avatar_url": "https://avatars.githubusercontent.com/u/20539759?v=4",
+      "profile": "https://github.com/jecampagne",
+      "contributions": [
+        "bug"
+      ]
+    },
+    {
+      "login": "eelregit",
+      "name": "Yin Li",
+      "avatar_url": "https://avatars.githubusercontent.com/u/7311098?v=4",
+      "profile": "https://github.com/eelregit",
+      "contributions": [
+        "code",
+        "bug"
+      ]
+    },
+    {
+      "login": "mihir-r-kondapalli",
+      "name": "mihir-r-kondapalli",
+      "avatar_url": "https://avatars.githubusercontent.com/u/90729208?v=4",
+      "profile": "https://github.com/mihir-r-kondapalli",
+      "contributions": [
+        "bug"
+      ]
+    }
+  ],
+  "contributorsPerLine": 7,
+  "projectName": "jax_cosmo",
+  "projectOwner": "DifferentiableUniverseInitiative",
+  "repoType": "github",
+  "repoHost": "https://github.com",
+  "skipCi": true,
+  "commitType": "docs",
+  "commitConvention": "angular"
+}

.github/workflows/main.yml

@@ -0,0 +1,31 @@
+# This is a basic workflow to help you get started with Actions
+
+name: Style
+
+# Controls when the action will run. Triggers the workflow on push or pull request
+# events but only for the master branch
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+    - uses: actions/checkout@v2
+
+    # Runs a single command using the runners shell
+    - name: python-format-action
+      shell: bash -l {0}
+      run: |
+        pip install black reorder-python-imports
+        find . -name "*.py" | xargs reorder-python-imports
+        black --check .

.github/workflows/pythonpackage.yml

@@ -15,30 +15,28 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.6, 3.7, 3.8]
+        python-version: [3.8, 3.9]
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v1
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: setup-conda
-      uses: s-weigand/setup-conda@v1.0.2
+
+    - uses: conda-incubator/setup-miniconda@v2
       with:
-        # Wether to activate the conda base env (Default: 'true')
-        activate-conda: true
-        #  If conda should be updated before running other commands (Default: 'false')
-        update-conda: false
-        # Python version which should be installed with conda (default: 'Default')
         python-version: ${{ matrix.python-version }}
-        # Additional channels like 'conda-forge' which can be used to install packages
-        conda-channels: conda-forge
+        channels: conda-forge,defaults
+        channel-priority: strict
+        show-channel-urls: true
+        auto-update-conda: true
+
     - name: Install dependencies
+      shell: bash -l {0}
       run: |
-        conda install pytest
+        conda config --set always_yes yes
+        conda install pytest pip 
         conda install -c conda-forge pyccl
         pip install .
+  
     - name: Test with pytest
+      shell: bash -l {0}
       run: |
         pytest

.gitignore

@@ -127,3 +127,6 @@ dmypy.json
 
 # Pyre type checker
 .pyre/
+
+docs/notebooks/dev
+notebooks/dev

.pre-commit-config.yaml

@@ -0,0 +1,12 @@
+repos:
+  - repo: https://github.com/psf/black
+    rev: 22.12.0
+    hooks:
+    - id: black
+      language_version: python3.10
+
+  - repo: https://github.com/asottile/reorder_python_imports
+    rev: v3.9.0
+    hooks:
+    - id: reorder-python-imports
+

CHANGELOG.md

@@ -0,0 +1,26 @@
+# Change log
+
+<!--
+Remember to align the itemized text with the first line of an item within a list.
+
+Categories for updates can be:
+* Changes
+* Bugs
+* Breaking Changes
+* Deprecations
+-->
+
+## jax-cosmo v0.1.0 (Feb 5th 2023)
+
+- Changes:
+  - Official v0.1.0 release of the code.
+
+## jax-cosmo v0.1rc10 (Unreleased)
+
+- Changes:
+  - Transferred contributing information to CONTRIBUTING.md
+
+## jax-cosmo v0.1rc9 (Jan 20th 2022)
+
+- Changes:
+  - Updated dark energy EOS computation for stability reasons

CODE_OF_CONDUCT.md

@@ -0,0 +1,128 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, religion, or sexual identity
+and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+  and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the
+  overall community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+  advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+  address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at
+francois.lanusse@gmail.com.
+All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series
+of actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or
+permanent ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior,  harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within
+the community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.0, available at
+https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct
+enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at
+https://www.contributor-covenant.org/translations.