From 2fc8b60978c4f843c5728307efe7e8aec80212d3 Mon Sep 17 00:00:00 2001 From: Denise Worthen Date: Wed, 20 Nov 2019 12:05:26 -0500 Subject: [PATCH] Feature/add comparisons (#4) * added additional comparisons for baselines * add logs --- compsets/cpld_fv3_mom6_cice_2d_atm_flux.input | 60 ++++- .../build_fv3_mom6_cice.exe.log | 244 +++++++++--------- log/report-hera.intel-log/rtreport.txt | 178 ++++++++++--- 3 files changed, 326 insertions(+), 156 deletions(-) diff --git a/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input b/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input index 0c3eb5c5..8455617d 100644 --- a/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input +++ b/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input @@ -138,7 +138,65 @@ test cpld_fv3_mom6_cice_2d_atm_flux: fv3_mom6_cice.exe { 'dynf048.tile4.nc' .bitcmp. "@[CNTL]" 'dynf048.tile5.nc' .bitcmp. "@[CNTL]" 'dynf048.tile6.nc' .bitcmp. "@[CNTL]" - + 'RESTART/coupler.res' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.tile1.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.tile2.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.tile3.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.tile4.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.tile5.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_core.res.tile6.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_srf_wnd.res.tile1.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_srf_wnd.res.tile2.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_srf_wnd.res.tile3.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_srf_wnd.res.tile4.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_srf_wnd.res.tile5.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_srf_wnd.res.tile6.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_tracer.res.tile1.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_tracer.res.tile2.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_tracer.res.tile3.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_tracer.res.tile4.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_tracer.res.tile5.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/fv_tracer.res.tile6.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/phy_data.tile1.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/phy_data.tile2.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/phy_data.tile3.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/phy_data.tile4.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/phy_data.tile5.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/phy_data.tile6.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/sfc_data.tile1.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/sfc_data.tile2.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/sfc_data.tile3.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/sfc_data.tile4.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/sfc_data.tile5.nc' .bitcmp. "@[CNTL]/RESTART" + 'RESTART/sfc_data.tile6.nc' .bitcmp. "@[CNTL]/RESTART" + 'MOM6_RESTART/MOM.res.nc' .bitcmp. "@[CNTL]/RESTART" + 'MOM6_RESTART/MOM.res_1.nc' .bitcmp. "@[CNTL]/RESTART" + 'MOM6_RESTART/MOM.res_2.nc' .bitcmp. "@[CNTL]/RESTART" + 'MOM6_RESTART/MOM.res_3.nc' .bitcmp. "@[CNTL]/RESTART" + 'restart/iced.2016-10-05-00000.nc' .bitcmp. "@[CNTL]/RESTART" + 'mediator_FBaccumAtm_restart.tile1.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumAtm_restart.tile2.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumAtm_restart.tile3.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumAtm_restart.tile4.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumAtm_restart.tile5.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumAtm_restart.tile6.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumOcn_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumIce_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumLnd_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumHyd_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBaccumAtmOcn_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtm_a_restart.tile1.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtm_a_restart.tile2.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtm_a_restart.tile3.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtm_a_restart.tile4.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtm_a_restart.tile5.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtm_a_restart.tile6.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBIce_i_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBOcn_o_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBLnd_l_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBHyd_h_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" + 'mediator_FBAtmOcn_o_restart.nc' .bitcmp. "@[CNTL]/MEDIATOR_after_2d" # Executable validation. This makes an MD5 sum of the fv3.exe # for comparison against the MD5 sum made in the build job. # This is to ensure the executable did not change during the diff --git a/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log b/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log index 87fd87a8..8dcf9671 100644 --- a/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log +++ b/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log @@ -1,21 +1,21 @@ + [[ fv3_mom6_cice.exe == fv3_mom6_cice.exe ]] -+ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe -+ md5sum=/scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe.md5 ++ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe ++ md5sum=/scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe.md5 + OPTS=app=coupledFV3_MOM6_CICE -+ mkdir -p /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/include -+ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/include/modules_fv3_mom6_cice -+ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model ++ mkdir -p /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/include ++ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/include/modules_fv3_mom6_cice ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3 + which aprun which: no aprun in (/scratch1/NCEPDEV/nems/emc.nemspara/soft/emc-utils/1.1.0/bin:/apps/hpss:/apps/rocoto/1.3.1/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/apps/local/bin:/apps/local/sbin:/apps/slurm/default/slurm/tools:/apps/slurm/default/bin:/apps/slurm/default/sbin:/apps/slurm/tools/sbank/bin) + ./NEMS/NEMSAppBuilder norebuild app=coupledFV3_MOM6_CICE ls: cannot access ../conf/component_*.mk: No such file or directory NEMSAppBuilder: make app=coupledFV3_MOM6_CICE build -Convert /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/coupledFV3_MOM6_CICE.appBuilder -...into /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/coupledFV3_MOM6_CICE.appBuilder.mk -Include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/coupledFV3_MOM6_CICE.appBuilder.mk -echo 'FMS FV3 MOM6 CICE' > "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/components.mk" +Convert /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/coupledFV3_MOM6_CICE.appBuilder +...into /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/coupledFV3_MOM6_CICE.appBuilder.mk +Include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/coupledFV3_MOM6_CICE.appBuilder.mk +echo 'FMS FV3 MOM6 CICE' > "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/components.mk" Adding FV3 makeopts to FMS makeopts -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/fv3gfs ; \ +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/fv3gfs ; \ exec make all Currently Loaded Modules: @@ -27,19 +27,19 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/fv3gfs' -mkdir -p "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" -mv fms.mk "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/." -cp -fp *.a *.mod ../include/*.h "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL"/. -make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/fv3gfs' -test -d /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL -Compiling into /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL on hera -cp -fp /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems \ - "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3"/conf/configure.fv3 -cp -fp /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/modules.nems \ - "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3"/conf/modules.fv3 -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3 ; \ - exec make COMP=FV3 COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3 COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL MACHINE_ID=hera FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL nemsinstall +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/fv3gfs' +mkdir -p "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL" +mv fms.mk "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/." +cp -fp *.a *.mod ../include/*.h "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL"/. +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/fv3gfs' +test -d /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL +Compiling into /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL on hera +cp -fp /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/configure.nems \ + "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3"/conf/configure.fv3 +cp -fp /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/modules.nems \ + "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3"/conf/modules.fv3 +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3 ; \ + exec make COMP=FV3 COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3 COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL MACHINE_ID=hera FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL nemsinstall Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -50,71 +50,71 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' -make -C cpl FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3' +make -C cpl FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL Build standalone FV3 io ... -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/cpl' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/cpl' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/cpl' -make -C gfsphysics FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/cpl' +make -C gfsphysics FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit Build standalone FV3 gfsphysics ... -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/gfsphysics' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/gfsphysics' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/gfsphysics' -make -C ipd FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/gfsphysics' +make -C ipd FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit Build standalone FV3 gfsphysics ... -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/ipd' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/ipd' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/ipd' -make -C io FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/ipd' +make -C io FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL Build standalone FV3 io ... $ESMF_INC is [-I/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/mod -I/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/include -I/apps/netcdf/4.6.1/intel/16.1.150/include] -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/io' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/io' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/io' -make -C atmos_cubed_sphere FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/io' +make -C atmos_cubed_sphere FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL Build standalone FV3 fv3core ... -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/atmos_cubed_sphere' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/atmos_cubed_sphere' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/atmos_cubed_sphere' -make -C ../stochastic_physics FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/atmos_cubed_sphere' +make -C ../stochastic_physics FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit Build standalone FV3 stochastic_physics ... -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/stochastic_physics' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/stochastic_physics' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/stochastic_physics' -make libfv3cap.a FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/stochastic_physics' +make libfv3cap.a FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3' make[2]: `libfv3cap.a' is up to date. -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' -make esmf_make_fragment FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3' +make esmf_make_fragment FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3' # additional include files needed for PGI -#@echo "ESMF_DEP_INCPATH = /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/nems_dir" >> fv3.mk +#@echo "ESMF_DEP_INCPATH = /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/nems_dir" >> fv3.mk Finished generating ESMF self-describing build dependency makefile fragment: fv3.mk -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' -Installation into "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL" complete! +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3' +Installation into "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL" complete! -make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' -test -d /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL -rm -fr /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/exec -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; export COMP_SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" MACHINE_ID="hera" ; \ +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3' +test -d /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL +rm -fr /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6/exec +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; export COMP_SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL" MACHINE_ID="hera" ; \ set -e ; \ -cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ; \ -./compile.sh --platform hera --fms-dir "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" +cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6 ; \ +./compile.sh --platform hera --fms-dir "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL" Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -125,9 +125,9 @@ Currently Loaded Modules: -Will use FMS from: /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +Will use FMS from: /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL ++ pwd -+ BASEDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ++ BASEDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6 + MACHINE_ID=hera + COMPILE_OPTION=hera-intel.mk + compile_MOM6_LIB=1 @@ -136,7 +136,7 @@ Will use FMS from: /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/F + [[ 1 == 1 ]] + echo 'compile MOM6 library ...' compile MOM6 library ... -+ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6 + mkdir -p build/intel/MOM6_LIB/repro + cd build/intel/MOM6_LIB/repro + [[ -f path_names ]] @@ -147,32 +147,32 @@ generating file_paths ... A list of the files you checked out is in the file path_names. + echo 'generating makefile ...' generating makefile ... -+ ../../../../src/mkmf/bin/mkmf -t ../../../../src/mkmf/templates/hera-intel.mk -p lib_ocean.a -o -I/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL path_names ++ ../../../../src/mkmf/bin/mkmf -t ../../../../src/mkmf/templates/hera-intel.mk -p lib_ocean.a -o -I/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL path_names ........................................................................................................................................................................................................................................... Makefile is ready. + echo 'compiling MOM6 library...' compiling MOM6 library... + make NETCDF=4 REPRO=1 lib_ocean.a -make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/build/intel/MOM6_LIB/repro' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6/build/intel/MOM6_LIB/repro' make[1]: `lib_ocean.a' is up to date. -make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/build/intel/MOM6_LIB/repro' +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6/build/intel/MOM6_LIB/repro' + echo 'compiling MOM6 library successful' compiling MOM6 library successful + echo 'compiling MOM6 library done' compiling MOM6 library done -+ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6 + mkdir -p exec/hera/ -+ ln -s /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/build/intel/MOM6_LIB/repro exec/hera/lib_ocean ++ ln -s /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6/build/intel/MOM6_LIB/repro exec/hera/lib_ocean + [[ 0 == 1 ]] + echo ================================================== ================================================== + [[ 0 == 1 ]] + echo 'Next recommended step is to rejoice out of happiness from a successful compile.' Next recommended step is to rejoice out of happiness from a successful compile. -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ; \ - exec make -f makefile.nuopc COMP_SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" MACHINE_ID="hera" \ - "FMSDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" \ - "NEMSMOMDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/exec/hera" \ - "INSTALLDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" install +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6 ; \ + exec make -f makefile.nuopc COMP_SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL" MACHINE_ID="hera" \ + "FMSDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL" \ + "NEMSMOMDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6/exec/hera" \ + "INSTALLDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL" install Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -183,19 +183,19 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6' rm -f mom6.mk.install -mkdir -p /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL -cp -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/exec/hera/lib_ocean/lib_ocean.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL -cp -f libmom.a mom_cap_mod.mod /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL -cp -f mom6.mk.install /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk -make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6' -test -d "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" -test -s "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk" -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ +mkdir -p /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL +cp -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6/exec/hera/lib_ocean/lib_ocean.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL +cp -f libmom.a mom_cap_mod.mod /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL +cp -f mom6.mk.install /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6' +test -d "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL" +test -s "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk" +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ set -eu ; \ -export COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" EXEDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" NEMS_GRID="T126_mx5" ; \ -cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE ; \ +export COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" EXEDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" NEMS_GRID="T126_mx5" ; \ +cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE ; \ ./comp_ice.backend Currently Loaded Modules: @@ -210,10 +210,10 @@ Currently Loaded Modules: NEMS_GRID = T126_mx025 tcx comp_ice.backend res grid mx025 1440x1080 ARCH is Linux.NEMS.hera -gmake[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice/compile' +gmake[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_SRC/lanl_cice/compile' gmake[1]: Nothing to be done for `all'. -gmake[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice/compile' -/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice +gmake[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_SRC/lanl_cice/compile' +/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_SRC/lanl_cice NTASK = 48 global N, block_size x 1440, 60 @@ -227,9 +227,9 @@ max_blocks = 1 0 = TRBRI, brine height tracer 7 = NBGCLYR, number of bio grid layers 0 = TRBGCS, number of BGC tracers -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_CAP ; exec make -f makefile.nuopc \ - COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" EXEDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" NEMS_GRID="T126_mx5" \ - "LANLCICEDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" "INSTALLDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL" install +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_CAP ; exec make -f makefile.nuopc \ + COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" EXEDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" NEMS_GRID="T126_mx5" \ + "LANLCICEDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE" "INSTALLDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL" install Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -240,30 +240,30 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice_cap' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_SRC/lanl_cice_cap' rm -f cice.mk.install -mkdir -p /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL -cp -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE/liblanl_cice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL -cp -f libcice.a cice_cap_mod.mod /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL -cp -f cice.mk.install /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk -make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice_cap' -test -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk +mkdir -p /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL +cp -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE/liblanl_cice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL +cp -f libcice.a cice_cap_mod.mod /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL +cp -f cice.mk.install /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_SRC/lanl_cice_cap' +test -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk ( \ echo "# Do not edit this file. It is automatically generated." ; \ -echo "# Edit the component list or /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems.NUOPC.in" ; \ -echo ; cat "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems.NUOPC.in" ; \ -echo fms_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk" ; echo fv3_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk" ; echo mom6_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk" ; echo cice_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk" ; ) > "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems.NUOPC" -. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ +echo "# Edit the component list or /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/configure.nems.NUOPC.in" ; \ +echo ; cat "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/configure.nems.NUOPC.in" ; \ +echo fms_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/fms.mk" ; echo fv3_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/fv3.mk" ; echo mom6_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk" ; echo cice_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk" ; ) > "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/configure.nems.NUOPC" +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ set -e ; \ -for m in /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk ; do \ +for m in /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk ; do \ test -s $m ; \ done ; \ -echo build NEMS after /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk ; \ -cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src ; \ +echo build NEMS after /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk ; \ +cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src ; \ make nems \ COMPONENTS="FMS FV3 MOM6 CICE" \ - FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL FV3_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL MOM6_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL CICE_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL TARGET="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x" ; \ -test -x /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x + FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL FV3_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL MOM6_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL CICE_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL TARGET="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/exe/NEMS.x" ; \ +test -x /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/exe/NEMS.x Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -274,12 +274,12 @@ Currently Loaded Modules: -build NEMS after /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk +build NEMS after /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk Components in linker order: CICE MOM6 FV3 FMS -CICE: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk -MOM6: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk -FV3: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk -FMS: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk +CICE: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/cice.mk +MOM6: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/mom6.mk +FV3: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/fv3.mk +FMS: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/fms.mk CPPFLAGS += ESMF_VERSION_STRING_GIT="ESMF_8_0_0" CPPFLAGS += ESMF_VERSION_BETASNAPSHOT="'F'" CPPFLAGS += ESMF_VERSION_MINOR="0" @@ -288,33 +288,33 @@ CPPFLAGS += ESMF_VERSION_STRING="8.0.0" CPPFLAGS += ESMF_VERSION_REVISION="0" CPPFLAGS += ESMF_VERSION_MAJOR="8" CPPFLAGS += ESMF_VERSION_PUBLIC="'T'" -make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src' cd ENS_Cpl && make stub -make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/ENS_Cpl' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/ENS_Cpl' ar rv ENS_Cpl.a ENS_CplComp_ESMFMod_STUB.o r - ENS_CplComp_ESMFMod_STUB.o -make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/ENS_Cpl' +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src/ENS_Cpl' echo libgocart is libgocart is echo extlibs is /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf extlibs is /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf -mpiifort -o /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x MAIN_NEMS.o module_NEMS_UTILS.o module_MEDIATOR_methods.o module_MEDIATOR.o module_MEDIATOR_SpaceWeather.o module_EARTH_INTERNAL_STATE.o module_EARTH_GRID_COMP.o module_NEMS_INTERNAL_STATE.o module_NEMS_GRID_COMP.o module_NEMS_Rusage.o nems_c_rusage.o /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/libcice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/liblanl_cice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/libmom.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/lib_ocean.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3cap.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3core.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3io.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libipd.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libgfsphys.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3cpl.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libstochastic_physics.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/libfms.a ENS_Cpl/ENS_Cpl.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf +mpiifort -o /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/exe/NEMS.x MAIN_NEMS.o module_NEMS_UTILS.o module_MEDIATOR_methods.o module_MEDIATOR.o module_MEDIATOR_SpaceWeather.o module_EARTH_INTERNAL_STATE.o module_EARTH_GRID_COMP.o module_NEMS_INTERNAL_STATE.o module_NEMS_GRID_COMP.o module_NEMS_Rusage.o nems_c_rusage.o /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/libcice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/CICE_INSTALL/liblanl_cice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/libmom.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/MOM6_INSTALL/lib_ocean.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libfv3cap.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libfv3core.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libfv3io.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libipd.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libgfsphys.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libfv3cpl.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FV3/FV3_INSTALL/libstochastic_physics.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/FMS/FMS_INSTALL/libfms.a ENS_Cpl/ENS_Cpl.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a(jas_stream.o): In function `jas_stream_tmpfile': jas_stream.c:(.text+0x7a7): warning: the use of `tmpnam' is dangerous, better use `mkstemp' -/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x is created. -make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src' -+ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src -+ cp -fp ../exe/NEMS.x /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe -+ cp -fp conf/modules.nems /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/include/modules_fv3_mom6_cice -+ md5sum /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe +/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/exe/NEMS.x is created. +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src' ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_3/NEMS/src ++ cp -fp ../exe/NEMS.x /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe ++ cp -fp conf/modules.nems /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/include/modules_fv3_mom6_cice ++ md5sum /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe + unset md5sum + unset OPTS + set -xe + set -xe -+ test -s /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe -+ test -x /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe ++ test -s /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe ++ test -x /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe _______________________________________________________________ -Start Epilog v19.07.23 on node h14c34 for job 753347 :: Wed Nov 13 15:40:43 UTC 2019 -Job 753347 (not serial) finished for user Denise.Worthen in partition hera with exit code 0:0 +Start Epilog v19.07.23 on node h3c50 for job 879718 :: Tue Nov 19 21:12:53 UTC 2019 +Job 879718 (not serial) finished for user Denise.Worthen in partition hera with exit code 0:0 _______________________________________________________________ -End Epilogue v19.07.23 Wed Nov 13 15:40:43 UTC 2019 +End Epilogue v19.07.23 Tue Nov 19 21:12:53 UTC 2019 diff --git a/log/report-hera.intel-log/rtreport.txt b/log/report-hera.intel-log/rtreport.txt index 6c65f460..5209ecc9 100755 --- a/log/report-hera.intel-log/rtreport.txt +++ b/log/report-hera.intel-log/rtreport.txt @@ -1,18 +1,12 @@ Run rocotostat... Generate report... -WORKFLOW STARTED AT Wed Nov 13 15:39:46 2019 (+1573659586) +WORKFLOW STARTED AT Wed Nov 20 13:40:04 2019 (+1574257204) Repository information: REPO TOP: -feature/update_compsets 9f503e9 Updated README.md +develop 47c23c9 [origin/develop] minor changes to baseline and benchmark test cases #2 (#3) Fetch URL: https://github.com/DeniseWorthen/ufs-s2s-model.git - M compsets/all.input - M compsets/benchmark_cold.input - M compsets/benchmark_warm.input - M compsets/cpld_fv3_mom6_cice_2d_atm_flux.input - M compsets/cpld_fv3_mom6_cice_cold_atm_flux.input - M compsets/datesuite_warm.input M log/report-hera.intel-log/build_fv3_mom6_cice.exe.log M log/report-hera.intel-log/rtreport.txt @@ -44,8 +38,8 @@ Fetch URL: https://github.com/noaa-psd/stochastic_physics BUILD fv3_mom6_cice.exe: SUCCEEDED TEST #1: PASS - Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Wed Nov 13 16:03:55 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) - Wed Nov 13 16:03:55 UTC 2019 + Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Tue Nov 19 21:13:57 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) + Tue Nov 19 21:13:58 UTC 2019 phyf048.tile1.nc: bit-for-bit identical phyf048.tile2.nc: bit-for-bit identical phyf048.tile3.nc: bit-for-bit identical @@ -58,15 +52,74 @@ TEST #1: PASS dynf048.tile4.nc: bit-for-bit identical dynf048.tile5.nc: bit-for-bit identical dynf048.tile6.nc: bit-for-bit identical + RESTART/coupler.res: bit-for-bit identical + RESTART/fv_core.res.nc: bit-for-bit identical + RESTART/fv_core.res.tile1.nc: bit-for-bit identical + RESTART/fv_core.res.tile2.nc: bit-for-bit identical + RESTART/fv_core.res.tile3.nc: bit-for-bit identical + RESTART/fv_core.res.tile4.nc: bit-for-bit identical + RESTART/fv_core.res.tile5.nc: bit-for-bit identical + RESTART/fv_core.res.tile6.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile1.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile2.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile3.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile4.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile5.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile6.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile1.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile2.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile3.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile4.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile5.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile6.nc: bit-for-bit identical + RESTART/phy_data.tile1.nc: bit-for-bit identical + RESTART/phy_data.tile2.nc: bit-for-bit identical + RESTART/phy_data.tile3.nc: bit-for-bit identical + RESTART/phy_data.tile4.nc: bit-for-bit identical + RESTART/phy_data.tile5.nc: bit-for-bit identical + RESTART/phy_data.tile6.nc: bit-for-bit identical + RESTART/sfc_data.tile1.nc: bit-for-bit identical + RESTART/sfc_data.tile2.nc: bit-for-bit identical + RESTART/sfc_data.tile3.nc: bit-for-bit identical + RESTART/sfc_data.tile4.nc: bit-for-bit identical + RESTART/sfc_data.tile5.nc: bit-for-bit identical + RESTART/sfc_data.tile6.nc: bit-for-bit identical + MOM6_RESTART/MOM.res.nc: bit-for-bit identical + MOM6_RESTART/MOM.res_1.nc: bit-for-bit identical + MOM6_RESTART/MOM.res_2.nc: bit-for-bit identical + MOM6_RESTART/MOM.res_3.nc: bit-for-bit identical + restart/iced.2016-10-05-00000.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile1.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile2.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile3.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile4.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile5.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile6.nc: bit-for-bit identical + mediator_FBaccumOcn_restart.nc: bit-for-bit identical + mediator_FBaccumIce_restart.nc: bit-for-bit identical + mediator_FBaccumLnd_restart.nc: bit-for-bit identical + mediator_FBaccumHyd_restart.nc: bit-for-bit identical + mediator_FBaccumAtmOcn_restart.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile1.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile2.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile3.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile4.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile5.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile6.nc: bit-for-bit identical + mediator_FBIce_i_restart.nc: bit-for-bit identical + mediator_FBOcn_o_restart.nc: bit-for-bit identical + mediator_FBLnd_l_restart.nc: bit-for-bit identical + mediator_FBHyd_h_restart.nc: bit-for-bit identical + mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe - Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - TEST PASSED AT Wed Nov 13 16:53:43 UTC 2019 + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe + Expected md5sum: a54f0575cdcfbbec0da65baf42a41edc + Actual md5sum: a54f0575cdcfbbec0da65baf42a41edc + TEST PASSED AT Tue Nov 19 22:06:20 UTC 2019 TEST #2: PASS - Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Wed Nov 13 15:48:25 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold 384) - Wed Nov 13 15:48:25 UTC 2019 + Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Tue Nov 19 21:14:00 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold 384) + Tue Nov 19 21:14:00 UTC 2019 phyf001.tile1.nc: bit-for-bit identical phyf001.tile2.nc: bit-for-bit identical phyf001.tile3.nc: bit-for-bit identical @@ -122,14 +175,14 @@ TEST #2: PASS mediator_FBOcn_o_restart.nc: bit-for-bit identical mediator_scalars_restart.txt: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe - Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - TEST PASSED AT Wed Nov 13 15:54:21 UTC 2019 + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe + Expected md5sum: a54f0575cdcfbbec0da65baf42a41edc + Actual md5sum: a54f0575cdcfbbec0da65baf42a41edc + TEST PASSED AT Tue Nov 19 21:19:49 UTC 2019 TEST #3: PASS - Test cpld_fv3_mom6_cice_cold_atm_flux starting at Wed Nov 13 15:48:25 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold start) - Wed Nov 13 15:48:25 UTC 2019 + Test cpld_fv3_mom6_cice_cold_atm_flux starting at Tue Nov 19 21:13:59 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold start) + Tue Nov 19 21:13:59 UTC 2019 phyf001.tile1.nc: bit-for-bit identical phyf001.tile2.nc: bit-for-bit identical phyf001.tile3.nc: bit-for-bit identical @@ -185,14 +238,14 @@ TEST #3: PASS mediator_FBOcn_o_restart.nc: bit-for-bit identical mediator_scalars_restart.txt: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe - Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - TEST PASSED AT Wed Nov 13 15:51:04 UTC 2019 + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe + Expected md5sum: a54f0575cdcfbbec0da65baf42a41edc + Actual md5sum: a54f0575cdcfbbec0da65baf42a41edc + TEST PASSED AT Tue Nov 19 21:16:40 UTC 2019 TEST #4: PASS - Test cpld_fv3_mom6_cice_2d_atm_flux starting at Wed Nov 13 16:06:32 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) - Wed Nov 13 16:06:32 UTC 2019 + Test cpld_fv3_mom6_cice_2d_atm_flux starting at Tue Nov 19 21:13:58 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) + Tue Nov 19 21:13:58 UTC 2019 phyf048.tile1.nc: bit-for-bit identical phyf048.tile2.nc: bit-for-bit identical phyf048.tile3.nc: bit-for-bit identical @@ -205,12 +258,71 @@ TEST #4: PASS dynf048.tile4.nc: bit-for-bit identical dynf048.tile5.nc: bit-for-bit identical dynf048.tile6.nc: bit-for-bit identical + RESTART/coupler.res: bit-for-bit identical + RESTART/fv_core.res.nc: bit-for-bit identical + RESTART/fv_core.res.tile1.nc: bit-for-bit identical + RESTART/fv_core.res.tile2.nc: bit-for-bit identical + RESTART/fv_core.res.tile3.nc: bit-for-bit identical + RESTART/fv_core.res.tile4.nc: bit-for-bit identical + RESTART/fv_core.res.tile5.nc: bit-for-bit identical + RESTART/fv_core.res.tile6.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile1.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile2.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile3.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile4.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile5.nc: bit-for-bit identical + RESTART/fv_srf_wnd.res.tile6.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile1.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile2.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile3.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile4.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile5.nc: bit-for-bit identical + RESTART/fv_tracer.res.tile6.nc: bit-for-bit identical + RESTART/phy_data.tile1.nc: bit-for-bit identical + RESTART/phy_data.tile2.nc: bit-for-bit identical + RESTART/phy_data.tile3.nc: bit-for-bit identical + RESTART/phy_data.tile4.nc: bit-for-bit identical + RESTART/phy_data.tile5.nc: bit-for-bit identical + RESTART/phy_data.tile6.nc: bit-for-bit identical + RESTART/sfc_data.tile1.nc: bit-for-bit identical + RESTART/sfc_data.tile2.nc: bit-for-bit identical + RESTART/sfc_data.tile3.nc: bit-for-bit identical + RESTART/sfc_data.tile4.nc: bit-for-bit identical + RESTART/sfc_data.tile5.nc: bit-for-bit identical + RESTART/sfc_data.tile6.nc: bit-for-bit identical + MOM6_RESTART/MOM.res.nc: bit-for-bit identical + MOM6_RESTART/MOM.res_1.nc: bit-for-bit identical + MOM6_RESTART/MOM.res_2.nc: bit-for-bit identical + MOM6_RESTART/MOM.res_3.nc: bit-for-bit identical + restart/iced.2016-10-05-00000.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile1.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile2.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile3.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile4.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile5.nc: bit-for-bit identical + mediator_FBaccumAtm_restart.tile6.nc: bit-for-bit identical + mediator_FBaccumOcn_restart.nc: bit-for-bit identical + mediator_FBaccumIce_restart.nc: bit-for-bit identical + mediator_FBaccumLnd_restart.nc: bit-for-bit identical + mediator_FBaccumHyd_restart.nc: bit-for-bit identical + mediator_FBaccumAtmOcn_restart.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile1.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile2.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile3.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile4.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile5.nc: bit-for-bit identical + mediator_FBAtm_a_restart.tile6.nc: bit-for-bit identical + mediator_FBIce_i_restart.nc: bit-for-bit identical + mediator_FBOcn_o_restart.nc: bit-for-bit identical + mediator_FBLnd_l_restart.nc: bit-for-bit identical + mediator_FBHyd_h_restart.nc: bit-for-bit identical + mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe - Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 - TEST PASSED AT Wed Nov 13 16:23:36 UTC 2019 -WORKFLOW REPORT AT Wed Nov 13 16:54:52 2019 (+1573664092) + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.25876/exec/fv3_mom6_cice.exe + Expected md5sum: a54f0575cdcfbbec0da65baf42a41edc + Actual md5sum: a54f0575cdcfbbec0da65baf42a41edc + TEST PASSED AT Tue Nov 19 21:33:18 UTC 2019 +WORKFLOW REPORT AT Wed Nov 20 13:40:36 2019 (+1574257236) Tests: 0 failed, 4 passed out of 4 Builds: 0 failed, 1 passed out of 1 REGRESSION TEST WAS SUCCESSFUL