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chloroketone.html
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<script type="text/javascript" src="jsmol/JSmol.min.js"></script>
<script type="text/javascript">
var Info = {
color: "#FFFFFF", // white background
height: 400,
width: "100%", // fill the JSMol box to its container's width
coverImage: "images/white.png",
deferApplet: true, // don't load until user clicks on JSMol box
deferUncover: true, // don't uncover until script fully executed
script: "script scripts/chloroketone1.txt",
use: "HTML5",
j2sPath: "jsmol/j2s",
serverURL: "http://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php",
disableInitialConsole: true,
debug: false,
};
// don't load any JSMol until the page itself has finished loading
$(document).ready(function(){
// prevent JSMol from taking entire page
Jmol.setDocument(0);
// create new JSMol instance with parameters defined in Info above
Jmol.getApplet("myJmol1", Info);
// reuse Info parameters for subsequent JSMol instances, changing
// only the script path
Info.script = "script scripts/chloroketone2.txt";
Jmol.getApplet("myJmol2", Info);
// put JSMol code into the correct containers (id=jsmolWindowN)
$("#jsmolWindow1").html(Jmol.getAppletHtml(myJmol1));
$("#jsmolWindow2").html(Jmol.getAppletHtml(myJmol2));
// give our JSMol containers breathing room above and below
$("#myJmol1_appletinfotablediv").css({
"margin-top": "10px",
"margin-right": "auto",
"margin-bottom": "10px",
"margin-left": "auto"
});
$("#myJmol2_appletinfotablediv").css({
"margin-top": "10px",
"margin-right": "auto",
"margin-bottom": "10px",
"margin-left": "auto"
});
$("#resetBtn1").click(reset1);
$("#resetBtn2").click(reset2);
$("#spinBox1").click(spin1);
$("#spinBox2").click(spin2);
});
function reset1(event){
Jmol.script(myJmol1, "script scripts/chloroketone1.txt")
};
function reset2(event){
Jmol.script(myJmol2, "script scripts/chloroketone2.txt")
};
function spin1(event){
if (event.target.checked){
Jmol.script(myJmol1, "set spin x 10; set spin y 10; spin on")
} else {
Jmol.script(myJmol1, "spin off")
};
};
function spin2(event){
if (event.target.checked){
Jmol.script(myJmol2, "set spin x 10; set spin y 10; spin on")
} else {
Jmol.script(myJmol2, "spin off")
};
};
// turn off the JSMol alert that binary file loading is limited
Jmol._alertNoBinary = false;
</script>
<!-- Page Title: Chloroketone -->
<h2>Introduction</h2>
<p>
These scripts show the binding of a suicide substrate analog,
tosyl-L-phenylalanine chloromethyl ketone (TPCK) to chymotrypsin. In the
active site, His57 becomes covalently modified when the enzyme attempts to
carry out its catalytic cycle on the sucide substrate. (Based on 2gmt.pdb,
Kreutter et al. (1994) Biochemistry <strong>33</strong>: 13792-13800)
</p>
<br>
<h2>TPCK</h2>
<p>
Here is a <span style="color:green;"> chloroketone suicide substrate</span>
bound to chymotrypsin.
</p>
<!-- JSMol Window Container -->
<div id="jsmolWindow1"></div>
<!-- UI Control Box -->
<div style="text-align: center;">
<!-- give the button a right margin for spacing -->
<button type="button" id="resetBtn1" style="margin-right: 10px;">Reset</button>
<input type="checkbox" id="spinBox1"> Spin On/Off
</div>
<br>
<h2>Active Site</h2>
<p>
It makes a covalent bond to the active site, His57
(<span style="color:gold;">YELLOW</span>).
</p>
<div id="jsmolWindow2"></div>
<div style="text-align: center; margin-top: 10px;">
<button type="button" id="resetBtn2" style="margin-right: 10px;">Reset</button>
<input type="checkbox" id="spinBox2"> Spin On/Off
</div>