diff --git a/flash_attn/cute/block_sparsity.py b/flash_attn/cute/block_sparsity.py
index 6c72f00f728..3fad8c9f491 100644
--- a/flash_attn/cute/block_sparsity.py
+++ b/flash_attn/cute/block_sparsity.py
@@ -98,6 +98,12 @@ def _check_and_expand_block(
     expanded_cnt = _expand_sparsity_tensor(
         cnt, expected_count_shape, f"{name}_block_cnt", context, hint
     )
+    # [Note] Allow Compact block sparse indices
+    # Allow the last dimension (n_blocks) of idx to be <= expected, since
+    # FA4 only accesses indices 0..cnt-1 per query tile. This enables compact
+    # index tensors that avoid O(N^2) memory at long sequence lengths.
+    if idx.ndim == 4 and idx.shape[3] <= expected_index_shape[3]:
+        expected_index_shape = (*expected_index_shape[:3], idx.shape[3])
     expanded_idx = _expand_sparsity_tensor(
         idx, expected_index_shape, f"{name}_block_idx", context, hint
     )
@@ -200,9 +206,11 @@ def infer_block_sparse_expected_shapes(
             raise ValueError(f"Block sparse tensors{context} {dim_name} dim must be {tgt} or 1.")
     if mask_block_cnt.shape[2] != mask_block_idx.shape[2]:
         raise ValueError(f"Block sparse tensors{context} must share the same m-block dimension.")
-    if mask_block_idx.shape[3] != expected_n_blocks:
+    # [Note] Allow Compact block sparse indices: FA4 only accesses indices 0..cnt-1
+    # per query tile, so idx.shape[3] can be <= expected_n_blocks.
+    if mask_block_idx.shape[3] > expected_n_blocks:
         raise ValueError(
-            f"Block sparse tensors{context} n-block dimension must be {expected_n_blocks}."
+            f"Block sparse tensors{context} n-block dimension must be <= {expected_n_blocks}."
         )
     if expected_m_blocks != num_m_blocks:
         raise ValueError(
diff --git a/tests/cute/test_mask_mod.py b/tests/cute/test_mask_mod.py
index d9ca8c68df5..26e0a5e1353 100644
--- a/tests/cute/test_mask_mod.py
+++ b/tests/cute/test_mask_mod.py
@@ -1712,5 +1712,91 @@ def test_persistent_blocksparse_empty_tiles():
 
 
 
+def test_compact_block_sparse_indices():
+    """Test that compact block sparse index tensors (idx.shape[3] < n_blocks) work correctly.
+
+    FA4 only accesses indices 0..cnt-1 per query tile, so the index tensor's last
+    dimension does not need to be as large as ceil(seqlen_k / block_size_n). This
+    test verifies that truncated (compact) index tensors produce identical output
+    to full-sized ones.
+    """
+    torch.manual_seed(42)
+    batch_size = 1
+    nheads = 4
+    seqlen_q = 1024
+    seqlen_k = 1024
+    headdim = 128
+    tile_m = 128
+    tile_n = 128
+    dtype = torch.bfloat16
+
+    sparse_tile_m = 2 * tile_m if COMPUTE_CAPABILITY == 10 else tile_m
+
+    mask_mod_cute, mask_mod_flex = get_mask_pair(
+        "block_diagonal", seqlen_q=seqlen_q, seqlen_k=seqlen_k, window_size=None
+    )
+    tensors = create_tensors(
+        batch_size, seqlen_q, seqlen_k, nheads, nheads, headdim, headdim, dtype
+    )
+
+    bm = create_block_mask(
+        mask_mod_flex, batch_size, nheads, seqlen_q, seqlen_k,
+        device="cuda", BLOCK_SIZE=(sparse_tile_m, tile_n),
+    )
+    (_, _, kv_mask_cnt, kv_mask_idx, full_kv_cnt, full_kv_idx, *_) = bm.as_tuple()
+
+    # Determine the max count across all query tiles — this is the compact last dim
+    max_mask_k = kv_mask_cnt.max().item() if kv_mask_cnt is not None else 0
+    max_full_k = full_kv_cnt.max().item() if full_kv_cnt is not None else 0
+    max_k = max(max_mask_k, max_full_k, 1)
+
+    # Truncate index tensors to compact size
+    kv_mask_idx_compact = kv_mask_idx[:, :, :, :max_k].contiguous()
+    full_kv_idx_compact = full_kv_idx[:, :, :, :max_k].contiguous() if full_kv_idx is not None else None
+
+    block_sparse_compact = BlockSparseTensorsTorch(
+        mask_block_cnt=kv_mask_cnt,
+        mask_block_idx=kv_mask_idx_compact,
+        full_block_cnt=full_kv_cnt,
+        full_block_idx=full_kv_idx_compact,
+        block_size=(sparse_tile_m, tile_n),
+    )
+
+    out_compact, _ = _flash_attn_fwd(
+        q=tensors["q"], k=tensors["k"], v=tensors["v"],
+        out=tensors["out"].clone(), lse=tensors["lse"].clone(),
+        softmax_scale=1.0 / math.sqrt(headdim),
+        causal=False, mask_mod=mask_mod_cute,
+        block_sparse_tensors=block_sparse_compact,
+        return_lse=True,
+    )
+
+    # Reference: use full-sized index tensors
+    block_sparse_full = BlockSparseTensorsTorch(
+        mask_block_cnt=kv_mask_cnt,
+        mask_block_idx=kv_mask_idx,
+        full_block_cnt=full_kv_cnt,
+        full_block_idx=full_kv_idx,
+        block_size=(sparse_tile_m, tile_n),
+    )
+
+    out_full, _ = _flash_attn_fwd(
+        q=tensors["q"], k=tensors["k"], v=tensors["v"],
+        out=tensors["out"].clone(), lse=tensors["lse"].clone(),
+        softmax_scale=1.0 / math.sqrt(headdim),
+        causal=False, mask_mod=mask_mod_cute,
+        block_sparse_tensors=block_sparse_full,
+        return_lse=True,
+    )
+
+    assert not torch.isnan(out_compact).any(), "Compact output has NaN"
+    assert torch.isfinite(out_compact).all(), "Compact output has Inf"
+    # Compact and full should produce bit-identical results
+    assert torch.equal(out_compact, out_full), (
+        f"Compact and full block sparse outputs differ: "
+        f"max diff = {(out_compact - out_full).abs().max().item():.2e}"
+    )
+
+
 if __name__ == "__main__":
     pytest.main([__file__, "-v", "-s"])