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docker-compose-dev.yml
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docker-compose-dev.yml
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# This is for spinning up core services as single hosts in the DEV environment
version: "3.6"
services:
medcat-snomed:
extends:
file: ./docker-compose.yml
service: medcat-snomed
image: cogstack-model-serve_medcat-snomed:dev
container_name: dev-cms_medcat-snomed
volumes:
- ${MODEL_PACKAGE_FULL_PATH}:/app/model/model.zip:ro
environment:
- BASE_MODEL_FULL_PATH=$MODEL_PACKAGE_FULL_PATH
- AWS_ACCESS_KEY_ID=
- AWS_SECRET_ACCESS_KEY=
- MLFLOW_S3_ENDPOINT_URL=
- MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
- MLFLOW_TRACKING_USERNAME=
- MLFLOW_TRACKING_PASSWORD=
- MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
- GELF_INPUT_URI=
- AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
- AUTH_JWT_SECRET=$AUTH_JWT_SECRET
- AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
- AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
- HTTP_PROXY=$HTTP_PROXY
- HTTPS_PROXY=$HTTPS_PROXY
- NO_PROXY=localhost
- http_proxy=$HTTP_PROXY
- https_proxy=$HTTPS_PROXY
- NO_PROXY=localhost
medcat-icd10:
extends:
file: ./docker-compose.yml
service: medcat-icd10
image: cogstack-model-serve_medcat-icd10:dev
container_name: dev-cms_medcat-icd10
environment:
- BASE_MODEL_FULL_PATH=$MODEL_PACKAGE_FULL_PATH
- AWS_ACCESS_KEY_ID=
- AWS_SECRET_ACCESS_KEY=
- MLFLOW_S3_ENDPOINT_URL=
- MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
- MLFLOW_TRACKING_USERNAME=
- MLFLOW_TRACKING_PASSWORD=
- MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
- GELF_INPUT_URI=
- AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
- AUTH_JWT_SECRET=$AUTH_JWT_SECRET
- AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
- AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
- HTTP_PROXY=$HTTP_PROXY
- HTTPS_PROXY=$HTTPS_PROXY
- NO_PROXY=localhost
- http_proxy=$HTTP_PROXY
- https_proxy=$HTTPS_PROXY
- NO_PROXY=localhost
de-identification:
extends:
file: ./docker-compose.yml
service: de-identification
image: cogstack-model-serve_de-identification:dev
container_name: dev-cms_trf-deid
environment:
- BASE_MODEL_FULL_PATH=$MODEL_PACKAGE_FULL_PATH
- AWS_ACCESS_KEY_ID=
- AWS_SECRET_ACCESS_KEY=
- MLFLOW_S3_ENDPOINT_URL=
- MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
- MLFLOW_TRACKING_USERNAME=
- MLFLOW_TRACKING_PASSWORD=
- MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
- GELF_INPUT_URI=
- AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
- AUTH_JWT_SECRET=$AUTH_JWT_SECRET
- AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
- AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
- HTTP_PROXY=$HTTP_PROXY
- HTTPS_PROXY=$HTTPS_PROXY
- NO_PROXY=localhost
- http_proxy=$HTTP_PROXY
- https_proxy=$HTTPS_PROXY
- NO_PROXY=localhost
medcat-deid:
extends:
file: ./docker-compose.yml
service: medcat-deid
image: cogstack-model-serve_medcat-deid:dev
container_name: dev-cms_medcat-deid
environment:
- BASE_MODEL_FULL_PATH=$MODEL_PACKAGE_FULL_PATH
- AWS_ACCESS_KEY_ID=
- AWS_SECRET_ACCESS_KEY=
- MLFLOW_S3_ENDPOINT_URL=
- MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
- MLFLOW_TRACKING_USERNAME=
- MLFLOW_TRACKING_PASSWORD=
- MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
- GELF_INPUT_URI=
- AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
- AUTH_JWT_SECRET=$AUTH_JWT_SECRET
- AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
- AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
- HTTP_PROXY=$HTTP_PROXY
- HTTPS_PROXY=$HTTPS_PROXY
- NO_PROXY=localhost
- http_proxy=$HTTP_PROXY
- https_proxy=$HTTPS_PROXY
- NO_PROXY=localhost
medcat-umls:
extends:
file: ./docker-compose.yml
service: medcat-umls
image: cogstack-model-serve_medcat-umls:dev
container_name: dev-cms_medcat-umls
environment:
- BASE_MODEL_FULL_PATH=$MODEL_PACKAGE_FULL_PATH
- AWS_ACCESS_KEY_ID=
- AWS_SECRET_ACCESS_KEY=
- MLFLOW_S3_ENDPOINT_URL=
- MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
- MLFLOW_TRACKING_USERNAME=
- MLFLOW_TRACKING_PASSWORD=
- MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
- GELF_INPUT_URI=
- AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
- AUTH_JWT_SECRET=$AUTH_JWT_SECRET
- AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
- AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
- HTTP_PROXY=$HTTP_PROXY
- HTTPS_PROXY=$HTTPS_PROXY
- NO_PROXY=localhost
- http_proxy=$HTTP_PROXY
- https_proxy=$HTTPS_PROXY
- NO_PROXY=localhost
volumes:
retrained-models:
driver: local
networks:
cms:
driver: bridge