0.17.0 (2024-07-01)
- Add refresh-prog-info subcommand (8597635)
- copy over gene_id_to_names.tsv to quant directory (8597635)
- support new piscem geometry flags (8597635)
0.16.2 (2024-02-01)
- add seed parameter to piscem-based index build (7420657)
- improve doc string, fix error typo (8eb7302)
0.16.1 (2024-01-30)
- update 10xv3 permit list location (b3adcf3)
0.16.0 (2024-01-29)
- make piscem default, add --no-piscem flag (1642732)
0.15.1 (2023-10-29)
0.15.0 (2023-10-24)
- advanced params for piscem >= 0.7 (a19b492)
- accept boolean fields as simpleaf parameters (64d8191)
- be able to parse all kinds of json value (d2024f0)
- bump dependencies (44a0681)
- write workflow log when external command fails (ab62f03)
0.14.1 (2023-07-10)
- bump roers dependency (5e8a33c)
0.14.0 (2023-06-13)
- replace pyroe with roers (edcf2c5)
0.13.0 (2023-04-17)
- simpleaf workflow refresh + display version in simpleaf workflow list (c07bf99)
- change force update protocols estuary to an enum (b2a7e8f)
- improve workflow list and add --ext-codes flag to workflow run (a389e7f)
0.12.0 (2023-04-10)
- improve autodetection of index type (ed70433)
- improve logging when parsing commands from workflow description (083e714)
- improve logging when parsing commands from workflow description (0d91772)
0.11.1 (2023-04-07)
- add submodule to cargo.toml (6475ced)
0.11.0 (2023-04-07)
- add --skip-steps, --start-at, --resume for simpleaf workflow, and add get-workflow-config program (be205b1)
- Add Active field to workflow (22e0096)
- add more arguments and improve external command execution (475aabf)
- allow streaming transformation of complex geometry (11e177b)
- bump seq_geom version and print xform stats (4055cb5)
- improve workflow doc (dd8f3c5)
- improve workflow logging (07f811a)
- simpleaf RunWorkflow (21dd9d8)
- add explicit_pl to allowed filter arguments (30f86e9)
- fix incorrect collate cmd log recorded in the simpleaf_quant_log.json (8f9a59f)
- toy reference dir in testing dataset (6a9ed0e)
- toy reference dir in testing dataset (095efcb)
- Update af_utils.rs (fff3b5e)
- update library call to get simplified description string (4d87286)
0.10.0 (2023-02-12)
- improve logging (5d20450)
- add --overwrite flag to index command (2340945)
0.9.0 (2023-02-08)
- attempt to infer t2g if not provided explicitly (656a84a)
0.8.1 (2023-01-03)
- minor dep version bumps (e3d79fe)
0.8.0 (2023-01-03)
- switch to tracing for logging (01538c6)
- improve helping message (9a3d851)
0.7.0 (2022-11-15)
- quant from map and min-reads (0621a2d)
0.6.0 (2022-10-26)
- create AF_HOME if needed in set-paths (0d5411b)
- create AF_HOME if needed in set-paths (742c2e2)
- create home dir if it doesn't exist (bae0d42)
0.5.3 (2022-10-11)
- expect cells (c163249)
0.5.2 (2022-10-01)
- add version flag (786df29)
0.5.1 (2022-08-23)
- parsing of multiple files for quant (349642e)
0.5.0 (2022-08-21)
- added ability to set expected-ori in
quant(66aab95)
0.4.0 (2022-08-04)
0.3.0 (2022-08-02)
- add chemistries command (75e3dbe)
- doc and usage (a52f866)
0.2.1 (2022-07-29)
- fix Cargo.toml (179dfdc)
0.2.0 (2022-07-29)
- add required cargo fields
0.1.1 (2022-07-29)
- try to force cargo publish (1f13cb5)