diff --git a/pkgs/by-name/li/litestar/package.nix b/pkgs/by-name/li/litestar/package.nix
index 14d597236c96a..3aed08801b3a8 100644
--- a/pkgs/by-name/li/litestar/package.nix
+++ b/pkgs/by-name/li/litestar/package.nix
@@ -45,6 +45,21 @@ python3Packages.buildPythonApplication rec {
     picologging
   ];
 
+  nativeCheckInputs = with python3Packages; [
+    pytestCheckHook
+    pytest-lazy-fixtures
+    pytest-xdist
+    pytest-mock
+    pytest-asyncio
+    pytest-timeout
+    pytest-rerunfailures
+  ];
+
+  pytestFlagsArray = [
+    # Follow github CI
+    "docs/examples/"
+  ];
+
   meta = {
     homepage = "https://litestar.dev/";
     platforms = lib.platforms.unix;
diff --git a/pkgs/by-name/se/selenium-manager/package.nix b/pkgs/by-name/se/selenium-manager/package.nix
index 3f28c4d6ee8a2..213f97a9dd828 100644
--- a/pkgs/by-name/se/selenium-manager/package.nix
+++ b/pkgs/by-name/se/selenium-manager/package.nix
@@ -7,18 +7,18 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "selenium-manager";
-  version = "4.27.0";
+  version = "4.28.0";
 
   src = fetchFromGitHub {
     owner = "SeleniumHQ";
     repo = "selenium";
-    rev = "selenium-${version}";
-    hash = "sha256-1i+kPOWTpLYzwhPgUoQXLQ4k+Q1w9KL2VNxvs38SqPc=";
+    tag = "selenium-${version}";
+    hash = "sha256-b5xwuZ4lcwLbGhJuEmHYrFXoaTW/M0ABdK3dvbpj8oM=";
   };
 
   sourceRoot = "${src.name}/rust";
 
-  cargoHash = "sha256-lD9SFqBO9hhyTD4e7LSBktJzbj7uXk6naHEp9uZPhPc=";
+  cargoHash = "sha256-hEfAfds0LSuTmEEydjS2Q96GWlmZKZstt3+tFUOHNBA=";
 
   buildInputs = lib.optionals stdenv.hostPlatform.isDarwin [
     darwin.apple_sdk.frameworks.SystemConfiguration
diff --git a/pkgs/development/python-modules/picologging/default.nix b/pkgs/development/python-modules/picologging/default.nix
index c5a3ac1782738..6d6d278097975 100644
--- a/pkgs/development/python-modules/picologging/default.nix
+++ b/pkgs/development/python-modules/picologging/default.nix
@@ -25,6 +25,12 @@ buildPythonPackage rec {
     hash = "sha256-t75D7aNKAifzeCPwtyKp8LoiXtbbXspRFYnsI0gx+V4=";
   };
 
+  patches = [
+    # For python 313
+    # https://github.com/microsoft/picologging/pull/212
+    ./pr-212.patch
+  ];
+
   build-system = [
     setuptools
     cmake
diff --git a/pkgs/development/python-modules/picologging/pr-212.patch b/pkgs/development/python-modules/picologging/pr-212.patch
new file mode 100644
index 0000000000000..01498fcd74091
--- /dev/null
+++ b/pkgs/development/python-modules/picologging/pr-212.patch
@@ -0,0 +1,94 @@
+diff --git a/src/picologging/compat.hxx b/src/picologging/compat.hxx
+index d3356da..be7a1fc 100644
+--- a/src/picologging/compat.hxx
++++ b/src/picologging/compat.hxx
+@@ -88,4 +88,12 @@ static inline PyObject* _Py_XNewRef(PyObject *obj)
+ }
+ #endif
+ 
++// For Python 3.13 and above, PyTime_t is now part of the public API
++#if PY_VERSION_HEX >= 0x030d0000
++#define _PyTime_t PyTime_t
++#define _PyTime_AsSecondsDouble PyTime_AsSecondsDouble
++#define _PyTime_AsMilliseconds PyTime_AsMilliseconds
++#define _PyTime_ROUND_CEILING PyTime_ROUND_CEILING
++#endif
++
+ #endif // COMPAT_H
+\ No newline at end of file
+
+From fe313d8b3dcf0115e1be781e03b20673d3f51c3f Mon Sep 17 00:00:00 2001
+From: Anthony Shaw <anthony.p.shaw@gmail.com>
+Date: Sat, 14 Sep 2024 17:33:25 +1000
+Subject: [PATCH 2/2] Patch other changed APIs for pytime
+
+---
+ pyproject.toml                |  2 +-
+ src/picologging/compat.hxx    |  2 --
+ src/picologging/logrecord.cxx | 13 +++++++++++++
+ 3 files changed, 14 insertions(+), 3 deletions(-)
+
+diff --git a/pyproject.toml b/pyproject.toml
+index 33abe66..27628c9 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -1,7 +1,7 @@
+ [build-system]
+ requires = [
+     "setuptools>=65.4.1",
+-    "scikit-build>=0.17.0",
++    "scikit-build>=0.18.0",
+     "cmake>=3.18",
+     "ninja",
+ ]
+diff --git a/src/picologging/compat.hxx b/src/picologging/compat.hxx
+index be7a1fc..7c6970d 100644
+--- a/src/picologging/compat.hxx
++++ b/src/picologging/compat.hxx
+@@ -92,8 +92,6 @@ static inline PyObject* _Py_XNewRef(PyObject *obj)
+ #if PY_VERSION_HEX >= 0x030d0000
+ #define _PyTime_t PyTime_t
+ #define _PyTime_AsSecondsDouble PyTime_AsSecondsDouble
+-#define _PyTime_AsMilliseconds PyTime_AsMilliseconds
+-#define _PyTime_ROUND_CEILING PyTime_ROUND_CEILING
+ #endif
+ 
+ #endif // COMPAT_H
+\ No newline at end of file
+diff --git a/src/picologging/logrecord.cxx b/src/picologging/logrecord.cxx
+index cec68c9..9f5cf86 100644
+--- a/src/picologging/logrecord.cxx
++++ b/src/picologging/logrecord.cxx
+@@ -16,11 +16,19 @@ _PyFloat_FromPyTime(_PyTime_t t)
+ 
+ _PyTime_t current_time()
+ {
++#if PY_VERSION_HEX >= 0x030d0000
++    _PyTime_t t;
++    if (PyTime_Time(&t) < 0) {
++        return -1;
++    }
++    return t;
++#else
+     _PyTime_t t;
+     if (_PyTime_GetSystemClockWithInfo(&t, NULL) < 0) {
+         return -1;
+     }
+     return t;
++#endif
+ }
+ 
+ PyObject* LogRecord_new(PyTypeObject* type, PyObject *initargs, PyObject *kwds)
+@@ -162,7 +170,12 @@ LogRecord* LogRecord_create(LogRecord* self, PyObject* name, PyObject* msg, PyOb
+     }
+ 
+     self->created = _PyTime_AsSecondsDouble(ctime);
++// msecs conversion isn't in 3.13 API
++#if PY_VERSION_HEX < 0x030d0000
+     self->msecs = _PyTime_AsMilliseconds(ctime, _PyTime_ROUND_CEILING);
++#else
++    self->msecs = 0;
++#endif
+     self->relativeCreated = _PyFloat_FromPyTime((ctime - startTime) * 1000);    
+     self->thread = PyThread_get_thread_ident(); // Only supported in Python 3.7+, if big demand for 3.6 patch this out for the old API.
+     // TODO #2 : See if there is a performant way to get the thread name.
diff --git a/pkgs/development/python-modules/psycopg/default.nix b/pkgs/development/python-modules/psycopg/default.nix
index fcfa87b1a9b20..527ab08cb9002 100644
--- a/pkgs/development/python-modules/psycopg/default.nix
+++ b/pkgs/development/python-modules/psycopg/default.nix
@@ -34,13 +34,13 @@
 
 let
   pname = "psycopg";
-  version = "3.2.3";
+  version = "3.2.4";
 
   src = fetchFromGitHub {
     owner = "psycopg";
-    repo = pname;
+    repo = "psycopg";
     tag = version;
-    hash = "sha256-vcUZvQeD5MnEM02phk73I9dpf0Eug95V7Rspi0s6S2M=";
+    hash = "sha256-gicntSAEK5VO67M2gAGR6wSwKQwgnbHxVUoPpaAbaDk=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/selenium/default.nix b/pkgs/development/python-modules/selenium/default.nix
index c596ec3b40c61..356d8f5598daf 100644
--- a/pkgs/development/python-modules/selenium/default.nix
+++ b/pkgs/development/python-modules/selenium/default.nix
@@ -20,17 +20,16 @@
 
 buildPythonPackage rec {
   pname = "selenium";
-  version = "4.27.1";
+  version = "4.28.0";
   pyproject = true;
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.9";
 
   src = fetchFromGitHub {
     owner = "SeleniumHQ";
     repo = "selenium";
-    # check if there is a newer tag with or without -python suffix
-    tag = "selenium-${version}-python";
-    hash = "sha256-XpTfZCERA2SmLOj6dcERVJ47K0gFhdXMTl9VCeE6eD8=";
+    tag = "selenium-${version}" + lib.optionalString (lib.versions.patch version != "0") "-python";
+    hash = "sha256-b5xwuZ4lcwLbGhJuEmHYrFXoaTW/M0ABdK3dvbpj8oM=";
   };
 
   patches = [ ./dont-build-the-selenium-manager.patch ];
diff --git a/pkgs/development/python-modules/selenium/dont-build-the-selenium-manager.patch b/pkgs/development/python-modules/selenium/dont-build-the-selenium-manager.patch
index 4654e00b49194..42ec9ce797744 100644
--- a/pkgs/development/python-modules/selenium/dont-build-the-selenium-manager.patch
+++ b/pkgs/development/python-modules/selenium/dont-build-the-selenium-manager.patch
@@ -1,5 +1,5 @@
 diff --git a/py/pyproject.toml b/py/pyproject.toml
-index e99a03cd5d..1061adbdf5 100644
+index 9afa6a63c7..c28f9a4cbc 100644
 --- a/py/pyproject.toml
 +++ b/py/pyproject.toml
 @@ -1,5 +1,5 @@
@@ -9,47 +9,13 @@ index e99a03cd5d..1061adbdf5 100644
  build-backend = "setuptools.build_meta"
  
  [project]
-diff --git a/py/setup.py b/py/setup.py
-deleted file mode 100755
-index 0f93e33f0e..0000000000
---- a/py/setup.py
-+++ /dev/null
-@@ -1,38 +0,0 @@
--# Licensed to the Software Freedom Conservancy (SFC) under one
--# or more contributor license agreements.  See the NOTICE file
--# distributed with this work for additional information
--# regarding copyright ownership.  The SFC licenses this file
--# to you under the Apache License, Version 2.0 (the
--# "License"); you may not use this file except in compliance
--# with the License.  You may obtain a copy of the License at
--#
--#   http://www.apache.org/licenses/LICENSE-2.0
--#
--# Unless required by applicable law or agreed to in writing,
--# software distributed under the License is distributed on an
--# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
--# KIND, either express or implied.  See the License for the
--# specific language governing permissions and limitations
--# under the License.
--
--from distutils.command.install import INSTALL_SCHEMES
--from os.path import dirname, join, abspath
--from setuptools import setup
--from setuptools.command.install import install
--from setuptools_rust import Binding, RustExtension
--
--
--for scheme in INSTALL_SCHEMES.values():
--    scheme['data'] = scheme['purelib']
--
--setup_args = {
--    'cmdclass': {'install': install},
--    'rust_extensions': [
--        RustExtension(
--            {"selenium-manager": "selenium.webdriver.common.selenium-manager"},
--            binding=Binding.Exec
--        )
--    ],
--}
+@@ -43,9 +43,6 @@ exclude = ["test*"]
+ namespaces = false
+ # include-package-data is `true` by default in pyproject.toml
+ 
+-[[tool.setuptools-rust.bins]]
+-target = "selenium.webdriver.common.selenium-manager"
 -
--setup(**setup_args)
+ [project.urls]
+ Repository = "https://github.com/SeleniumHQ/selenium/"
+ BugTracker = "https://github.com/SeleniumHQ/selenium/issues"
diff --git a/pkgs/development/python-modules/shapely/default.nix b/pkgs/development/python-modules/shapely/default.nix
index 914b6deccb6ca..9e078d92610c4 100644
--- a/pkgs/development/python-modules/shapely/default.nix
+++ b/pkgs/development/python-modules/shapely/default.nix
@@ -7,7 +7,7 @@
   pytestCheckHook,
   pythonOlder,
 
-  cython_0,
+  cython,
   geos,
   numpy,
   oldest-supported-numpy,
@@ -36,7 +36,7 @@ buildPythonPackage rec {
   ];
 
   nativeBuildInputs = [
-    cython_0
+    cython
     geos # for geos-config
     oldest-supported-numpy
     setuptools
@@ -45,7 +45,7 @@ buildPythonPackage rec {
 
   buildInputs = [ geos ];
 
-  propagatedBuildInputs = [ numpy ];
+  dependencies = [ numpy ];
 
   nativeCheckInputs = [ pytestCheckHook ];
 
@@ -68,11 +68,11 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [ "shapely" ];
 
-  meta = with lib; {
+  meta = {
     changelog = "https://github.com/shapely/shapely/blob/${version}/CHANGES.txt";
     description = "Manipulation and analysis of geometric objects";
     homepage = "https://github.com/shapely/shapely";
-    license = licenses.bsd3;
-    maintainers = teams.geospatial.members;
+    license = lib.licenses.bsd3;
+    maintainers = lib.teams.geospatial.members;
   };
 }
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index fb355d48bcc55..deeb109dbbc69 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -7550,6 +7550,10 @@ self: super: with self; {
 
   litestar-htmx = callPackage ../development/python-modules/litestar-htmx { };
 
+  litestar = toPythonModule (pkgs.litestar.override {
+    python3Packages = pythonPackages;
+  });
+
   littleutils = callPackage ../development/python-modules/littleutils { };
 
   livelossplot = callPackage ../development/python-modules/livelossplot { };