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bioschemastypesdrafts.json
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bioschemastypesdrafts.json
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{
"@context": {
"schema": "http://schema.org/",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"owl": "http://www.w3.org/2002/07/owl/",
"bioschemas": "https://discovery.biothings.io/view/bioschemas/",
"bioschemasdrafts": "https://discovery.biothings.io/view/bioschemasdrafts/",
"bioschemastypes": "https://discovery.biothings.io/view/bioschemastypes/",
"bioschemastypesdrafts": "https://discovery.biothings.io/view/bioschemastypesdrafts/",
"bioschemasdeprecated": "https://discovery.biothings.io/view/bioschemasdeprecated/",
"dct": "http://purl.org/dc/terms/",
"@dateModified": "01/19/2024, 16:02:56"
},
"@graph": [
{
"@id": "bioschemastypesdrafts:RNA",
"@type": "rdfs:Class",
"rdfs:comment": "RNA. Version 0.1-DRAFT-2019_06_21",
"rdfs:label": "RNA",
"rdfs:subClassOf": {
"@id": "bioschemastypes:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/blob/master/RNA/jsonld/type/RNA_v0.1-DRAFT-2019_06_21.json",
"https://bioschemas.org/types/RNA/0.1-DRAFT-2019_06_21"
]
},
{
"@id": "bioschemastypesdrafts:SequenceRange",
"@type": "rdfs:Class",
"rdfs:comment": "Used to define the range of a subsequence, typically used in conjunction with SequenceAnnotation to define the range of the annotation on the protein or gene sequence. Version: 0.1-DRAFT-2019_06_21.",
"rdfs:label": "SequenceRange",
"rdfs:subClassOf": {
"@id": "bioschemastypes:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/SequenceRange/0.1-DRAFT-2019_06_21",
"https://github.com/BioSchemas/specifications/blob/master/SequenceRange/jsonld/type/SequenceRange_v0.1-DRAFT-2019_06_21.json"
]
},
{
"@id": "bioschemastypesdrafts:TaxonName",
"@type": "rdfs:Class",
"rdfs:comment": "A name of a biological taxon, may it be valid (zoology) / accepted (botany) or not. Version: 0.1-DRAFT",
"rdfs:label": "TaxonName",
"rdfs:subClassOf": {
"@id": "schema:CreativeWork"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/TaxonName/0.1-DRAFT-TYPE",
"https://github.com/BioSchemas/specifications/blob/master/TaxonName/jsonld/type/TaxonName_v0.1-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:BioChemEntity",
"@type": "rdfs:Class",
"rdfs:comment": "Any biological, chemical, or biochemical thing. For example: a protein; a gene; a chemical; a synthetic chemical.\nVersion 0.8-DRAFT",
"rdfs:label": "BioChemEntity",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/BioChemEntity/0.8-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/BioChemEntity/jsonld/type/BioChemEntity_v0.8-DRAFT.jsonld"
]
},
{
"@id": "bioschemastypesdrafts:Study",
"@type": "rdfs:Class",
"rdfs:comment": " This Study profile presents the markup when describing a Study Version: 0.3-DRAFT",
"rdfs:label": "Study",
"rdfs:subClassOf": {
"@id": "schema:CreativeWork"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/blob/master/Study/jsonld/type/Study_v0.3-DRAFT.json",
"https://bioschemas.org/types/Study/0.3-DRAFT"
]
},
{
"@id": "bioschemastypesdrafts:LabProtocol",
"@type": "rdfs:Class",
"rdfs:comment": "An experimental lab protocol is a sequence of tasks and operations executed to perform experimental research in wet- or dry-labs. \n\nVersion: v0.5 \n\nChangelog: \n* Add DefinedTerm and PropertyValue for labEquipment, bioSample, sample, reagent and computationalTool so it works better with the coming LabPeocess\n\nPrepared by: Leyla Jael Castro",
"rdfs:label": "LabProtocol",
"rdfs:subClassOf": {
"@id": "schema:HowTo"
},
"schemaVersion": [
"https://schema.org/docs/releases.html#v23.0"
],
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/tree/master/LabProtocol/jsonld/type/LabProtocol_v0.5-DRAFT.jsonld",
"https://bioschemas.org/types/LabProtocol/0.5-DRAFT"
]
},
{
"@id": "bioschemastypesdrafts:Phenotype",
"@type": "rdfs:Class",
"rdfs:comment": "A phenotype. Version 0.3-DRAFT-2020_06_07",
"rdfs:label": "Phenotype",
"rdfs:subClassOf": {
"@id": "schema:Thing"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/tree/master/Phenotype/jsonld/type/Phenotype_v0.3-DRAFT-2020_06_07.json",
"https://bioschemas.org/types/Phenotype/0.3-DRAFT-2020_06_07"
]
},
{
"@id": "bioschemastypesdrafts:SequenceAnnotation",
"@type": "rdfs:Class",
"rdfs:comment": "Used to provide metadata about Sequence Annotations. The sequence can be an amino acid (protein) or nucleic acid (Gene, DNA, RNA). Version: 0.1-DRAFT-2019_06_21",
"rdfs:label": "SequenceAnnotation",
"rdfs:subClassOf": {
"@id": "bioschemastypes:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/SequenceAnnotation/0.1-DRAFT-2019_06_21",
"https://github.com/BioSchemas/specifications/tree/master/SequenceAnnotation/jsonld/type/SequenceAnnotation_v0.1-DRAFT-2019_06_21.json"
]
},
{
"@id": "bioschemastypesdrafts:Taxon",
"@type": "rdfs:Class",
"rdfs:comment": "A set of organisms asserted to represent a natural cohesive biological unit. Version: 0.4-DRAFT-2019_06_24",
"rdfs:label": "Taxon",
"rdfs:subClassOf": {
"@id": "schema:Thing"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/Taxon/0.4-DRAFT",
"https://github.com/BioSchemas/specifications/tree/master/Taxon/jsonld/type/Taxon_v0.4-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:BioChemStructure",
"@type": "rdfs:Class",
"rdfs:comment": "WwPDB and related data including modelled and hypothetical data. As well as 3D data for chemicals, e.g. stereo chemistry images in an analyzable format (not pure images). Version: 0.1-DRAFT-2019_06_20 (2019-06-20). Note, the parent class for this type has been updated to a pending class in schema.org.",
"rdfs:label": "BioChemStructure",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/BioChemStructure/0.1-DRAFT-2019_06_20",
"https://github.com/BioSchemas/specifications/tree/master/BioChemStructure/jsonld/type/BioChemStructure_v0.1-DRAFT-2019_06_20.json"
]
},
{
"@id": "bioschemastypesdrafts:DNA",
"@type": "rdfs:Class",
"rdfs:comment": "DNA\nVersion: 0.2-DRAFT-2019_06_20 (2019-06-20). Note, the parent class for this type has been updated to a pending class in schema.org.",
"rdfs:label": "DNA",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/DNA/0.2-DRAFT-2019_06_20",
"https://github.com/BioSchemas/specifications/tree/master/DNA/jsonld/type/DNA_v0.2-DRAFT-2019_06_20.json"
]
},
{
"@id": "bioschemastypesdrafts:Enzyme",
"@type": "rdfs:Class",
"rdfs:comment": "Version: 0.1-DRAFT-2019_06_20 (2019-06-20). Note, the parent class for this type has been updated to a pending class in schema.org.",
"rdfs:label": "Enzyme",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/tree/master/Enzyme/jsonld/type/Enzyme_v0.1-DRAFT-2019_06_20.json",
"https://bioschemas.org/types/Enzyme/0.1-DRAFT-2019_06_20"
]
},
{
"@id": "bioschemastypesdrafts:Sample",
"@type": "rdfs:Class",
"rdfs:comment": "To deliver on the identified use cases for samples, we have identified a minimal set of properties to encapsulate identification, linking, and metadata descriptions. Some of these properties are existing standard schema.org properties, others require Bioschemas extensions. Table 1 outlines the minimal set of properties for the \u2018Sample\u2019 concept and Table 2 shows our recommendations for use of the \u2018PropertyValue\u2019 concept to markup additional characteristics of a sample described within a sample page. We also propose a new concept, \u2018Biomedical Code\u2019, which is a generalisation of the existing \u2018Medical Code\u2019 concept defined in the health-lifesci.schema.org extension.",
"rdfs:label": "Sample",
"rdfs:subClassOf": {
"@id": "schema:Thing"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/tree/master/Sample/jsonld/type/Sample_v0.2-DRAFT-2018_11_09.json",
"https://bioschemas.org/types/Sample/0.2-DRAFT-2018_11_09"
]
},
{
"@id": "bioschemastypesdrafts:SequenceMatchingModel",
"@type": "rdfs:Class",
"rdfs:comment": "A model used to determine sequence matches such as domains in proteins. Version: 0.1-DRAFT-2019_06_21 (2019-06-21)",
"rdfs:label": "SequenceMatchingModel",
"rdfs:subClassOf": {
"@id": "schema:CreativeWork"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/tree/master/SequenceMatchingModel/jsonld/type/SequenceMatchingModel_v0.1-DRAFT-2019_06_21.json",
"https://bioschemas.org/types/SequenceMatchingModel/0.1-DRAFT-2019_06_21"
]
},
{
"@id": "bioschemastypesdrafts:Protein",
"@type": "rdfs:Class",
"rdfs:comment": "Protein is here used in its widest possible definition, as classes of amino acid based molecules. Amyloid-beta Protein in human (UniProt P05067), eukaryota (e.g. an OrthoDB group) or even a single molecule that one can point to are all of type schema:Protein. A protein can thus be a subclass of another protein, e.g. schema:Protein as a UniProt record can have multiple isoforms inside it which would also be schema:Protein. They can be imagined, synthetic, hypothetical or naturally occurring. This version has been added to schema.org as a pending type.",
"schema:schemaVersion": [
"https://github.com/BioSchemas/specifications/blob/master/Protein/jsonld/type/Protein_v0.4-DRAFT.json",
"https://bioschemas.org/types/Protein/0.4-DRAFT"
],
"rdfs:label": "Protein",
"rdfs:subClassOf": {
"@id": "bioschemastypesdrafts:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft"
},
{
"@id": "bioschemastypesdrafts:Gene",
"@type": "rdfs:Class",
"rdfs:comment": "A discrete unit of inheritance which affects one or more biological traits (Source: https://en.wikipedia.org/wiki/Gene). Examples include FOXP2 (Forkhead box protein P2), SCARNA21 (small Cajal body-specific RNA 21), A- (agouti genotype). Note, this version of the type has been added as a pending class in schema.org.",
"schema:schemaVersion": [
"https://bioschemas.org/types/Gene/0.4-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/Gene/jsonld/type/Gene_v0.4-DRAFT.json"
],
"rdfs:label": "Gene",
"rdfs:subClassOf": {
"@id": "bioschemastypesdrafts:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft"
},
{
"@id": "bioschemastypesdrafts:isCodingRNA",
"@type": "rdf:Property",
"rdfs:comment": "Indicates whether or not this RNA is a coding one.",
"rdfs:label": "isCodingRNA",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:RNA"
},
"schema:rangeIncludes": [
{
"@id": "schema:Boolean"
}
]
},
{
"@id": "bioschemastypesdrafts:rangeEnd",
"@type": "rdf:Property",
"rdfs:comment": "Final position of the range",
"rdfs:label": "rangeEnd",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceRange"
},
"schema:rangeIncludes": [
{
"@id": "schema:Integer"
}
]
},
{
"@id": "bioschemastypesdrafts:rangeStart",
"@type": "rdf:Property",
"rdfs:comment": "Initial position of the range.",
"rdfs:label": "rangeStart",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceRange"
},
"schema:rangeIncludes": [
{
"@id": "schema:Integer"
}
]
},
{
"@id": "bioschemastypesdrafts:endUncertainty",
"@type": "rdf:Property",
"rdfs:comment": "If the initial position is not known with reasonable certainty, specify here the uncertainty type as one of \u2018<\u2019 (any position before than rangeEnd), \u2018>\u2019 (any position after rangeEnd), \u2018~\u2019 (around rangeEnd), \u2018[#-#] (to indicate a range where rangeEnd could be located)\u2019.",
"rdfs:label": "endUncertainty",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceRange"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:startUncertainty",
"@type": "rdf:Property",
"rdfs:comment": "If the initial position is not known with reasonable certainty, specify here the uncertainty type as one of \u2018<\u2019 (any position before than rangeStart), \u2018>\u2019 (any position after rangeStart), \u2018~\u2019 (around the rangeStart), \u2018[#-#] (to indicate a range where rangeStart could be located)\u2019.",
"rdfs:label": "startUncertainty",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceRange"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:hasBioPolymerSequence",
"@type": "rdf:Property",
"rdfs:comment": "A symbolic representation of a BioChemEnity. For example, a nucleotide sequence of a Gene or an amino acid sequence of a Protein.",
"rdfs:label": "hasBioPolymerSequence",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioChemEntity"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:startDate",
"rdfs:comment": "The start date and time of the item (in ISO 8601 date format). ",
"@type": "rdf:Property",
"rdfs:label": "startDate",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:endDate",
"rdfs:comment": "The end date and time of the item (in ISO 8601 date format). ",
"@type": "rdf:Property",
"rdfs:label": "endDate",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:relatedStudy",
"rdfs:comment": "A study that is related to this one. ",
"@type": "rdf:Property",
"rdfs:label": "relatedStudy",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypesdrafts:Study"
}
]
},
{
"@id": "bioschemastypesdrafts:studyDomain",
"rdfs:comment": "Define the domain of the study. For example, the domain could be astrophysics, functional genomics or earth science. Those domains can also have an ontology reference. For example, in the life sciences we could have\nFunctional Genomics: http://edamontology.org/topic_0085\nProtemics: http://edamontology.org/topic_0121",
"@type": "rdf:Property",
"rdfs:label": "studyDomain",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:studyProcess",
"rdfs:comment": "A process performed as part of an experiment or wider study, i.e. intentionally designed.\nThese processes can have ontology URL attached to. For example, in the life sciences we could have \nRNA-seq of coding RNA from single cells: http://www.ebi.ac.uk/efo/EFO_0005684\ncase control design: http://www.ebi.ac.uk/efo/EFO_0001427",
"@type": "rdf:Property",
"rdfs:label": "studyProcess",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:studyLocation",
"rdfs:comment": "The location in which the study is taking/took place.",
"@type": "rdf:Property",
"rdfs:label": "studyLocation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:Place"
},
{
"@id": "schema:AdministrativeArea"
}
]
},
{
"@id": "bioschemastypesdrafts:studySubject",
"rdfs:comment": "A subject of the study, i.e. one of the medical conditions, therapies, devices, drugs, etc. investigated by the study.",
"@type": "rdf:Property",
"rdfs:label": "studySubject",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:MedicalEntity"
},
{
"@id": "schema:BioChemEntity"
}
]
},
{
"@id": "bioschemastypes:input",
"@type": "rdf:Property",
"rdfs:comment": "Specification of a consumed input.",
"rdfs:label": "input",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypes:FormalParameter"
}
]
},
{
"@id": "bioschemastypes:output",
"@type": "rdf:Property",
"rdfs:comment": "Specification of a produced output.",
"rdfs:label": "output",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypes:FormalParameter"
}
]
},
{
"@id": "bioschemastypesdrafts:intendedUse",
"@type": "rdf:Property",
"rdfs:comment": "Purpose and intended use stated to enable users to make a decision as to the suitability of this creative work (e.g., lab protocol, machine learning model, software) to their experimental problem or own use case.",
"rdfs:label": "intendedUse",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:ethicalLegalSocial",
"@type": "rdf:Property",
"rdfs:comment": "Considerations wrt ethical, legal and social aspects.",
"rdfs:label": "ethicalLegalSocial",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:computationalTool",
"@type": "rdf:Property",
"rdfs:comment": "Computational tool or workflow used to complete a part of this protocol.",
"rdfs:label": "computationalTool",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypes:ComputationalWorkflow"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:SoftwareApplication"
},
{
"@id": "schema:SoftwareSourceCode"
}
]
},
{
"@id": "bioschemastypesdrafts:sample",
"@type": "rdf:Property",
"rdfs:comment": "Sample used in the protocol. It could be a record in a Dataset describing the sample or a physical object corresponding to the sample or a URL pointing to the type of sample used.",
"rdfs:label": "sample",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Thing"
}
]
},
{
"@id": "bioschemastypesdrafts:bioSample",
"@type": "rdf:Property",
"rdfs:comment": "BioSample used in the protocol. It could be a record in a Dataset describing the sample or a physical object corresponding to the sample or a URL pointing to the type of sample used.",
"rdfs:label": "bioSample",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
},
{
"@id": "bioschemastypes:BioSample"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Taxon"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:labEquipment",
"@type": "rdf:Property",
"rdfs:comment": "A laboratory equipment used by a person to follow one or more steps described in this LabProtocol.",
"rdfs:label": "labEquipment",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:LabProtocol"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:protocolAdvantage",
"@type": "rdf:Property",
"rdfs:comment": "Situations where the LabProtocol has been successfully employed including advantageous elements (e.g. better yield, shorter running time).",
"rdfs:label": "protocolAdvantage",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:LabProtocol"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:CreativeWork"
}
]
},
{
"@id": "bioschemastypesdrafts:protocolApplication",
"@type": "rdf:Property",
"rdfs:comment": "Applications of the protocol list the full diversity of the applications of the method and support if is possible to extend the range of applications of the protocol. e.g. northern blot assays, sequencing, etc. ",
"rdfs:label": "protocolApplication",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:LabProtocol"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:CreativeWork"
}
]
},
{
"@id": "bioschemastypesdrafts:protocolLimitation",
"@type": "rdf:Property",
"rdfs:comment": "Situations where the Protocol would be unreliable or otherwise unsuccessful.",
"rdfs:label": "protocolLimitation",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:LabProtocol"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:CreativeWork"
}
]
},
{
"@id": "bioschemastypesdrafts:protocolOutcome",
"@type": "rdf:Property",
"rdfs:comment": "Actual outcome or result by a protocol execution. The shape of the expected outcome/result can be described using the property 'output'.",
"rdfs:label": "protocolOutcome",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:LabProtocol"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:CreativeWork"
}
]
},
{
"@id": "bioschemastypesdrafts:reagent",
"@type": "rdf:Property",
"rdfs:comment": "Reagents used in the protocol. DefinedTerm is preferred whenever possible, e.g., ChEBI and PubChem entities can be used whenever available. Commercial names are also acceptable. A reagent is defined as \u2018A substance used in a chemical reaction to detect, measure, examine, or produce other substances\u2019 in [CHEBI:33893](https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:33893).",
"rdfs:label": "reagent",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:LabProtocol"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
},
{
"@id": "schema:ChemicalSubstance"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:MolecularEntity"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:anatomicalLocation",
"@type": "rdf:Property",
"rdfs:comment": "Any part of an organism, typically a component of an anatomical system. Organs, tissues, and cells are all anatomical locations.",
"rdfs:label": "anatomicalLocation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:associatedDisease",
"@type": "rdf:Property",
"rdfs:comment": "Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue.",
"rdfs:label": "associatedDisease",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:MedicalCondition"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:bioChemAssociation",
"@type": "rdf:Property",
"rdfs:comment": "BioChemEntity, e.g., gene, associated to this Phenotype and relevant for its characterization, particularly useful for the molecular basis of this Phenotype.",
"rdfs:label": "bioChemAssociation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
}
]
},
{
"@id": "bioschemastypesdrafts:hasMolecularFunction",
"@type": "rdf:Property",
"rdfs:comment": "Molecular function performed by this BioChemEntity; please use PropertyValue if you want to include any evidence.",
"rdfs:label": "hasMolecularFunction",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:isLocatedInSubcellularLocation",
"@type": "rdf:Property",
"rdfs:comment": "Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence.",
"rdfs:label": "isLocatedInSubcellularLocation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:isInvolvedInBiologicalProcess",
"@type": "rdf:Property",
"rdfs:comment": "Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence.",
"rdfs:label": "isInvolvedInBiologicalProcess",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:taxonomicRange",
"@type": "rdf:Property",
"rdfs:comment": "The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity.",
"rdfs:label": "taxonomicRange",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:Taxon"
}
]
},
{
"@id": "bioschemastypesdrafts:sequenceOrientation",
"@type": "rdf:Property",
"rdfs:comment": "One of 1, 0 or -1.",
"rdfs:label": "sequenceOrientation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceAnnotation"
},
"schema:rangeIncludes": [
{
"@id": "schema:Integer"
}
]
},
{
"@id": "bioschemastypesdrafts:sequenceValue",
"@type": "rdf:Property",
"rdfs:comment": "value of the sequence",
"rdfs:label": "sequenceValue",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceAnnotation"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:childTaxon",
"rdfs:comment": "Closest child taxa of the taxon in question.\nInverse property: parentTaxon Direct, most proximate lower-rank child taxa",
"@type": "rdf:Property",
"rdfs:label": "childTaxon",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Taxon"
},
"schema:rangeIncludes": [
{
"@id": "schema:Taxon"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:parentTaxon",
"rdfs:comment": "Closest parent taxon of the taxon in question.\nInverse property: childTaxon Direct, most proximate higher-rank parent taxon",
"@type": "rdf:Property",
"rdfs:label": "parentTaxon",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Taxon"
},
"schema:rangeIncludes": [
{
"@id": "schema:Taxon"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:scientificName",
"rdfs:comment": "A TaxonName representing the currently valid (zoological) or accepted (botanical) name for that taxon.",
"@type": "rdf:Property",
"rdfs:label": "scientificName",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Taxon"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypesdrafts:TaxonName"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:alternateScientificName",
"rdfs:comment": "A TaxonName representing a scientific name, with authorship and date information if known, of a synonym of the currently valid (zoological) or accepted (botanical) name.",
"@type": "rdf:Property",
"rdfs:label": "alternateScientificName",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Taxon"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypesdrafts:TaxonName"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:boundMolecule",
"@type": "rdf:Property",
"rdfs:comment": "Molecule, e.g., ligand, bound to this BioChem structure",
"rdfs:label": "boundMolecule",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioChemStructure"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
},
{
"@id": "schema:ChemicalSubstance"
},
{
"@id": "schema:MolecularEntity"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:massResolution",
"@type": "rdf:Property",