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biopax3-short-metabolic-pathway.owl
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<?xml version="1.0"?>
<rdf:RDF
xmlns="http://www.biopax.org/examples/myExample#"
xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:p1="http://www.owl-ontologies.com/assert.owl#"
xml:base="http://www.biopax.org/examples/myExample#">
<owl:Ontology rdf:about="">
<owl:imports rdf:resource="http://www.biopax.org/release/biopax-level3.owl"/>
</owl:Ontology>
<bp:Protein rdf:ID="Protein_54">
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GLK</bp:standardName>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucokinase</bp:displayName>
<bp:entityReference>
<bp:ProteinReference rdf:ID="ProteinReference_15">
<bp:sequence rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL</bp:sequence>
<bp:xref>
<bp:UnificationXref rdf:ID="SwissProtTrEMBL_P46880">
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>P46880</bp:id>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 15608167</bp:comment>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>uniprot</bp:db>
</bp:UnificationXref>
</bp:xref>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucose kinase</bp:name>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucokinase</bp:displayName>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GLK</bp:standardName>
<bp:organism>
<bp:BioSource rdf:ID="Escherichia_coli">
<bp:xref>
<bp:UnificationXref rdf:ID="taxon_562">
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>562</bp:id>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>taxonomy</bp:db>
</bp:UnificationXref>
</bp:xref>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Escherichia coli</bp:displayName>
</bp:BioSource>
</bp:organism>
</bp:ProteinReference>
</bp:entityReference>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GLK_ECOLI</bp:name>
<bp:cellularLocation>
<bp:CellularLocationVocabulary rdf:ID="cytoplasm">
<bp:xref>
<bp:UnificationXref rdf:ID="GO_0005737">
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GO:0005737</bp:id>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 11483584 </bp:comment>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Gene Ontology</bp:db>
</bp:UnificationXref>
</bp:xref>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>This example is meant to provide an illustration of how various BioPAX slots should be filled; it is not intended to provide useful (or even accurate) biological information </bp:comment>
<bp:term rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>cytoplasm</bp:term>
</bp:CellularLocationVocabulary>
</bp:cellularLocation>
<bp:dataSource>
<bp:Provenance rdf:ID="SwissProtTrEMBL">
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Swiss-Prot/TrEMBL</bp:displayName>
</bp:Provenance>
</bp:dataSource>
<bp:dataSource>
<bp:Provenance rdf:ID="aMAZE">
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>aMAZE</bp:displayName>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
></bp:comment>
</bp:Provenance>
</bp:dataSource>
</bp:Protein>
<bp:ChemicalStructure rdf:ID="ChemicalStructure_9">
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
></bp:comment>
<bp:structureFormat rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>SMILES</bp:structureFormat>
<bp:structureData rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>[CH]3(n1(c2(c(nc1)c(N)ncn2)))(O[CH]([CH](O)[CH](O)3)COP(=O)(O)OP(O)(=O)OP(O)(=O)O)</bp:structureData>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ATP</rdfs:comment>
</bp:ChemicalStructure>
<bp:Stoichiometry rdf:ID="Stoichiometry_52">
<bp:stoichiometricCoefficient rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>1.0</bp:stoichiometricCoefficient>
<bp:physicalEntity>
<bp:SmallMolecule rdf:ID="alpha-D-glucose_6-phosphate">
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-glucose-6-phoshate</bp:name>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucose-6-P</bp:name>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-glucose 6-phosphate</bp:displayName>
<bp:entityReference>
<bp:SmallMoleculeReference rdf:ID="SmallMoleculeReference_13">
<bp:molecularWeight rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>260.14</bp:molecularWeight>
<bp:chemicalFormula rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C6H13O9P</bp:chemicalFormula>
<bp:structure>
<bp:ChemicalStructure rdf:ID="ChemicalStructure_7">
<bp:structureData rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C(OP(=O)(O)O)[CH]1([CH](O)[CH](O)[CH](O)[CH](O)O1)</bp:structureData>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-glucose-6-phosphate</rdfs:comment>
<bp:structureFormat rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>SMILES</bp:structureFormat>
</bp:ChemicalStructure>
</bp:structure>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-glucose 6-phosphate</bp:displayName>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-glu-6-p</bp:standardName>
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_C00668">
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135</bp:comment>
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C00668</bp:id>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>KEGG compound</bp:db>
</bp:UnificationXref>
</bp:xref>
</bp:SmallMoleculeReference>
</bp:entityReference>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>D-glucose-6-P</bp:name>
<bp:cellularLocation rdf:resource="#cytoplasm"/>
<bp:dataSource>
<bp:Provenance rdf:ID="KEGG">
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Kyoto Encyclopedia of Genes and Genomes</bp:standardName>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>KEGG</bp:displayName>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
></bp:comment>
</bp:Provenance>
</bp:dataSource>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>a-D-glu-6-p</bp:standardName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beeta-D-glucose-6-p</bp:name>
</bp:SmallMolecule>
</bp:physicalEntity>
</bp:Stoichiometry>
<bp:BiochemicalReaction rdf:ID="phosphoglucoisomerase">
<bp:eCNumber rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>5.3.1.9 </bp:eCNumber>
<bp:participantStoichiometry>
<bp:Stoichiometry rdf:ID="Stoichiometry_57">
<bp:stoichiometricCoefficient rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>1.0</bp:stoichiometricCoefficient>
<bp:physicalEntity>
<bp:SmallMolecule rdf:ID="beta-D-fructose_6-phosphate">
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
><FONT FACE="Symbol">b</FONT>-D-fructose-6-phosphate </bp:name>
<bp:entityReference>
<bp:SmallMoleculeReference rdf:ID="SmallMoleculeReference_14">
<bp:structure>
<bp:ChemicalStructure rdf:ID="ChemicalStructure_8">
<bp:structureData rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C(OP(O)(O)=O)[CH]1([CH](O)[CH](O)C(O)(O1)CO)</bp:structureData>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-fructose-6-phosphate</rdfs:comment>
<bp:structureFormat rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>SMILES</bp:structureFormat>
</bp:ChemicalStructure>
</bp:structure>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-fructose 6-phosphate</bp:displayName>
<bp:molecularWeight rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>260.14</bp:molecularWeight>
<bp:chemicalFormula rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C6H13O9P</bp:chemicalFormula>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-fru-6-p</bp:standardName>
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_C05345">
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135 </bp:comment>
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C05345</bp:id>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>kegg compound</bp:db>
</bp:UnificationXref>
</bp:xref>
</bp:SmallMoleculeReference>
</bp:entityReference>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:xref rdf:resource="#KEGG_C05345"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-fru-6-p</bp:standardName>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-fructose 6-phosphate</bp:displayName>
<bp:cellularLocation rdf:resource="#cytoplasm"/>
</bp:SmallMolecule>
</bp:physicalEntity>
</bp:Stoichiometry>
</bp:participantStoichiometry>
<bp:conversionDirection rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>REVERSIBLE</bp:conversionDirection>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-glu-6-p <=> beta-D-fru-6-p</bp:displayName>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:left rdf:resource="#alpha-D-glucose_6-phosphate"/>
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_R02740">
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>kegg reaction</bp:db>
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>R02740</bp:id>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135 </bp:comment>
</bp:UnificationXref>
</bp:xref>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-Glucose 6-phosphate => beta-D-Fructose 6-phosphate</bp:name>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-glu-6-p <=> b-D-fru-6-p</bp:standardName>
<bp:right rdf:resource="#beta-D-fructose_6-phosphate"/>
<bp:deltaG>
<bp:DeltaG rdf:ID="DeltaG_12">
<bp:deltaGPrime0 rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>0.4</bp:deltaGPrime0>
</bp:DeltaG>
</bp:deltaG>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-Glucose 6-phosphate ketol-isomerase</bp:name>
<bp:participantStoichiometry>
<bp:Stoichiometry rdf:ID="Stoichiometry_58">
<bp:physicalEntity rdf:resource="#alpha-D-glucose_6-phosphate"/>
<bp:stoichiometricCoefficient rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>1.0</bp:stoichiometricCoefficient>
</bp:Stoichiometry>
</bp:participantStoichiometry>
</bp:BiochemicalReaction>
<bp:SmallMoleculeReference rdf:ID="SmallMoleculeReference_10">
<bp:structure>
<bp:ChemicalStructure rdf:ID="ChemicalStructure_6">
<bp:structureFormat rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>SMILES</bp:structureFormat>
<bp:structureData rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>c12(n(cnc(c(N)ncn1)2)[CH]3(O[CH]([CH](O)[CH](O)3)COP(=O)(O)OP(O)(=O)O))</bp:structureData>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ADP</rdfs:comment>
</bp:ChemicalStructure>
</bp:structure>
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_C00008">
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C00008</bp:id>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135 </bp:comment>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>kegg compound</bp:db>
</bp:UnificationXref>
</bp:xref>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>adenosine diphosphate</bp:name>
<bp:chemicalFormula rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C10H15N5O10P2</bp:chemicalFormula>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ADP</bp:standardName>
<bp:molecularWeight rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>427.2</bp:molecularWeight>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Adenosine 5'-diphosphate</bp:displayName>
</bp:SmallMoleculeReference>
<bp:PublicationXref rdf:ID="PublicationXref49">
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>2549346</bp:id>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PubMed</bp:db>
</bp:PublicationXref>
<bp:UnificationXref rdf:ID="Swiss-ProtTrEMBL_Q9KH85">
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
> PMID: 15608167</bp:comment>
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Q9KH85</bp:id>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>UniProt</bp:db>
</bp:UnificationXref>
<bp:SmallMoleculeReference rdf:ID="SmallMoleculeReference_11">
<bp:structure rdf:resource="#ChemicalStructure_9"/>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>adenosine triphosphate</bp:name>
<bp:molecularWeight rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>507.18</bp:molecularWeight>
<bp:chemicalFormula rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C10H16N5O13P3</bp:chemicalFormula>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ATP</bp:standardName>
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_C00002">
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C00002</bp:id>
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>kegg compound</bp:db>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135 </bp:comment>
</bp:UnificationXref>
</bp:xref>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Adenosine 5'-triphosphate</bp:displayName>
</bp:SmallMoleculeReference>
<bp:SmallMolecule rdf:ID="ADP">
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Adenosine 5'-diphosphate</bp:displayName>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ADP</bp:standardName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>adenosine diphosphate</bp:name>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:entityReference rdf:resource="#SmallMoleculeReference_10"/>
<bp:cellularLocation rdf:resource="#cytoplasm"/>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:xref rdf:resource="#KEGG_C00008"/>
<bp:availability rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
></bp:availability>
</bp:SmallMolecule>
<bp:BiochemicalPathwayStep rdf:ID="BiochemicalPathwayStep_3">
<bp:stepDirection rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>LEFT-TO-RIGHT</bp:stepDirection>
<bp:stepConversion rdf:resource="#phosphoglucoisomerase"/>
<bp:stepProcess>
<bp:Catalysis rdf:ID="phosphoglucose_isomerase_converts_alpha-D-gluc-6-p_to_beta-D-fruc-6-p">
<bp:controller>
<bp:Protein rdf:ID="phosphoglucose_isomerase">
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucose-6-phosphate isomerase</bp:name>
<bp:entityReference>
<bp:ProteinReference rdf:ID="ProteinReference_16">
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>This example is meant to provide an illustration of how various BioPAX slots should be filled; it is not intended to provide useful (or even accurate) biological information </bp:comment>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PHI</bp:name>
<bp:sequence rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>KTFSEAIISGEWKGYTGKAITDVVNIGIGGSDLGPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNPLFDHHQKLLSKFFAQTEALAFGKSREVVEQEYRDQGKDPAT</bp:sequence>
<bp:xref rdf:resource="#Swiss-ProtTrEMBL_Q9KH85"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PGI</bp:standardName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>phosphohexose isomerase</bp:name>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>phosphoglucose isomerase</bp:displayName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucose-6-phosphate isomerase</bp:name>
<bp:organism rdf:resource="#Escherichia_coli"/>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GPI</bp:name>
</bp:ProteinReference>
</bp:entityReference>
<bp:cellularLocation rdf:resource="#cytoplasm"/>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PHI</bp:name>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>phosphoglucose isomerase</bp:displayName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>phosphohexose isomerase</bp:name>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PGI</bp:standardName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GPI</bp:name>
</bp:Protein>
</bp:controller>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>catalysis of (beta-D-glu-6-p <=> beta-D-fruc-6-p)</bp:displayName>
<bp:catalysisDirection rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>LEFT-TO-RIGHT</bp:catalysisDirection>
<bp:controlled rdf:resource="#phosphoglucoisomerase"/>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PGI -> (b-d-glu-6-p <=> b-D-fru-6p)</bp:standardName>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>The source of this data did not store catalyses of reactions as separate objects, so there are no unification x-refs pointing to the source of these BioPAX instances. </bp:comment>
<bp:availability rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
></bp:availability>
<bp:controlType rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ACTIVATION</bp:controlType>
</bp:Catalysis>
</bp:stepProcess>
</bp:BiochemicalPathwayStep>
<bp:Stoichiometry rdf:ID="Stoichiometry_37">
<bp:stoichiometricCoefficient rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>1.0</bp:stoichiometricCoefficient>
<bp:physicalEntity>
<bp:SmallMolecule rdf:ID="alpha-D-glucose">
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-glucose</bp:displayName>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:cellularLocation rdf:resource="#cytoplasm"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-glu</bp:standardName>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
><FONT FACE="Symbol">a</FONT>-D-glucose </bp:name>
<bp:entityReference>
<bp:SmallMoleculeReference rdf:ID="SmallMoleculeReference_12">
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-glu</bp:standardName>
<bp:structure>
<bp:ChemicalStructure rdf:ID="ChemicalStructure_5">
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>alpha-D-glucose</rdfs:comment>
<bp:structureData rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C1(C(O)C(O)C(O)C(O1)CO)(O)</bp:structureData>
<bp:structureFormat rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>SMILES</bp:structureFormat>
</bp:ChemicalStructure>
</bp:structure>
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_C00267">
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>kegg compound</bp:db>
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C00267</bp:id>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135 </bp:comment>
</bp:UnificationXref>
</bp:xref>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-glucose</bp:displayName>
<bp:chemicalFormula rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>C6H12O6</bp:chemicalFormula>
<bp:molecularWeight rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>180.16</bp:molecularWeight>
</bp:SmallMoleculeReference>
</bp:entityReference>
</bp:SmallMolecule>
</bp:physicalEntity>
</bp:Stoichiometry>
<bp:Stoichiometry rdf:ID="Stoichiometry_43">
<bp:physicalEntity>
<bp:SmallMolecule rdf:ID="ATP">
<bp:dataSource rdf:resource="#KEGG"/>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ATP</bp:standardName>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Adenosine 5'-triphosphate</bp:displayName>
<bp:entityReference rdf:resource="#SmallMoleculeReference_11"/>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>adenosine triphosphate</bp:name>
<bp:cellularLocation rdf:resource="#cytoplasm"/>
</bp:SmallMolecule>
</bp:physicalEntity>
<bp:stoichiometricCoefficient rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>1.0</bp:stoichiometricCoefficient>
</bp:Stoichiometry>
<bp:BiochemicalReaction rdf:ID="glucokinase">
<bp:xref>
<bp:UnificationXref rdf:ID="KEGG_R01786">
<bp:db rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>kegg reaction</bp:db>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>PMID: 9847135 </bp:comment>
<bp:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>R01786</bp:id>
</bp:UnificationXref>
</bp:xref>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucose ATP phosphotransferase </bp:name>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>beta-D-glu + ATP => beta-D-glu-6-p + ADP</bp:displayName>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:conversionDirection rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>REVERSIBLE</bp:conversionDirection>
<bp:participantStoichiometry rdf:resource="#Stoichiometry_43"/>
<bp:participantStoichiometry rdf:resource="#Stoichiometry_37"/>
<bp:left rdf:resource="#ATP"/>
<bp:participantStoichiometry rdf:resource="#Stoichiometry_52"/>
<bp:right rdf:resource="#ADP"/>
<bp:eCNumber rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>2.7.1.1 </bp:eCNumber>
<bp:left rdf:resource="#alpha-D-glucose"/>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:spontaneous rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bp:spontaneous>
<bp:right rdf:resource="#alpha-D-glucose_6-phosphate"/>
<bp:eCNumber rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>2.7.1.2 </bp:eCNumber>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ATP:D-glucose 6-phosphotransferase </bp:name>
<bp:participantStoichiometry>
<bp:Stoichiometry rdf:ID="Stoichiometry_49">
<bp:stoichiometricCoefficient rdf:datatype="http://www.w3.org/2001/XMLSchema#float"
>1.0</bp:stoichiometricCoefficient>
<bp:physicalEntity rdf:resource="#ADP"/>
</bp:Stoichiometry>
</bp:participantStoichiometry>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>b-D-glu => b-D-glu-6-p</bp:standardName>
</bp:BiochemicalReaction>
<bp:Pathway rdf:ID="Pathway50">
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glucose degradation</bp:name>
<bp:pathwayOrder rdf:resource="#BiochemicalPathwayStep_3"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>glycolysis</bp:standardName>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>This example is meant to provide an illustration of how various BioPAX slots should be filled; it is not intended to provide useful (or even accurate) biological information </bp:comment>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Glycolysis Pathway</bp:displayName>
<bp:availability rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>see http://www.amaze.ulb.ac.be/</bp:availability>
<bp:organism rdf:resource="#Escherichia_coli"/>
<bp:availability rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>All data within the pathway has the same availability</bp:availability>
<bp:pathwayComponent rdf:resource="#phosphoglucose_isomerase_converts_alpha-D-gluc-6-p_to_beta-D-fruc-6-p"/>
<bp:pathwayComponent>
<bp:Catalysis rdf:ID="glucokinase_converts_alpha-D-glu_to_alpha-D-glu-6-p">
<bp:controlType rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>ACTIVATION</bp:controlType>
<bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>catalysis of (alpha-D-glu <=> alpha-D-glu-6-p)</bp:displayName>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:controlled rdf:resource="#glucokinase"/>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>The source of this data did not store catalyses of reactions as separate objects, so there are no unification x-refs pointing to the source of these BioPAX instances. </bp:comment>
<bp:controller rdf:resource="#Protein_54"/>
<bp:standardName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>GLK -> (a-D-glu <=> a-D-glu-6-p)</bp:standardName>
<bp:catalysisDirection rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>LEFT-TO-RIGHT</bp:catalysisDirection>
</bp:Catalysis>
</bp:pathwayComponent>
<bp:pathwayComponent rdf:resource="#phosphoglucoisomerase"/>
<bp:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
></bp:comment>
<bp:pathwayComponent rdf:resource="#glucokinase"/>
<bp:name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Embden-Meyerhof pathway</bp:name>
<bp:xref rdf:resource="#PublicationXref49"/>
<bp:dataSource rdf:resource="#KEGG"/>
<bp:dataSource rdf:resource="#aMAZE"/>
<bp:pathwayOrder>
<bp:BiochemicalPathwayStep rdf:ID="BiochemicalPathwayStep_2">
<bp:stepConversion rdf:resource="#glucokinase"/>
<bp:nextStep rdf:resource="#BiochemicalPathwayStep_3"/>
<bp:stepDirection rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>LEFT-TO-RIGHT</bp:stepDirection>
<bp:stepProcess rdf:resource="#glucokinase_converts_alpha-D-glu_to_alpha-D-glu-6-p"/>
</bp:BiochemicalPathwayStep>
</bp:pathwayOrder>
</bp:Pathway>
</rdf:RDF>