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Added back paxtools-trove runtime dep. for parent pom.xml Java CI with Maven #61: Commit 12edd01 pushed by IgorRodchenkov
April 29, 2024 03:03 1m 23s master
master
April 29, 2024 03:03 1m 23s
Added back paxtools-trove runtime dep. for paxtools-console Java CI with Maven #60: Commit 7dd1f14 pushed by IgorRodchenkov
April 29, 2024 03:01 25s master
master
April 29, 2024 03:01 25s
Added back paxtools-trove module etc. (we need to switch to fastutil … Java CI with Maven #59: Commit 73e86f9 pushed by IgorRodchenkov
April 29, 2024 02:42 1m 27s master
master
April 29, 2024 02:42 1m 27s
Added genbank spelling variants for Resolver Java CI with Maven #58: Commit 9409b8e pushed by IgorRodchenkov
April 26, 2024 05:34 53s master
master
April 26, 2024 05:34 53s
Changed Resolver.checkRegExp logic - return true instead of false whe… Java CI with Maven #57: Commit 11b5aff pushed by IgorRodchenkov
April 26, 2024 05:05 50s master
master
April 26, 2024 05:05 50s
Polished Resolver, Normalizer Java CI with Maven #56: Commit 68e0b25 pushed by IgorRodchenkov
April 26, 2024 03:55 55s master
master
April 26, 2024 03:55 55s
Updated Resolver, Normalizer, jsonld-converter due to Jena bug/featur… Java CI with Maven #55: Commit 94483aa pushed by IgorRodchenkov
April 23, 2024 01:29 1m 29s master
master
April 23, 2024 01:29 1m 29s
Added custom synonyms for genbank collection (based on Drugbank data … Java CI with Maven #54: Commit 56d8a28 pushed by IgorRodchenkov
March 31, 2024 18:19 1m 15s master
master
March 31, 2024 18:19 1m 15s
Removed experimental -Dpaxtools.model.safeset=list feature (low perfo… Java CI with Maven #53: Commit c25e262 pushed by IgorRodchenkov
March 19, 2024 22:00 1m 7s master
master
March 19, 2024 22:00 1m 7s
Fixed console summarize command (missing hgnc symbols); switched from… Java CI with Maven #52: Commit 5d46a6e pushed by IgorRodchenkov
March 9, 2024 23:43 2m 33s master
master
March 9, 2024 23:43 2m 33s
Improved the normalizer (changed the default - use the prefix instead… Java CI with Maven #51: Commit 7d22355 pushed by IgorRodchenkov
March 4, 2024 23:18 1m 3s master
master
March 4, 2024 23:18 1m 3s
Fixed/improved the IDFetcher impl. for pattern/sif searcher/writer. Java CI with Maven #50: Commit b974f58 pushed by IgorRodchenkov
March 4, 2024 00:10 57s master
master
March 4, 2024 00:10 57s
Fixed a bug in the GSEA converter ("taxonomy" was hard-coded as the x… Java CI with Maven #49: Commit 6a8416a pushed by IgorRodchenkov
March 3, 2024 21:32 50s master
master
March 3, 2024 21:32 50s
Added a new synonym/spelling for ensembl Java CI with Maven #48: Commit 4926b62 pushed by IgorRodchenkov
March 3, 2024 17:58 56s master
master
March 3, 2024 17:58 56s
Added a couple of test cases for new synonyms Java CI with Maven #47: Commit 243220a pushed by IgorRodchenkov
March 2, 2024 22:33 49s master
master
March 2, 2024 22:33 49s
Added synonyms for genpept (biocyc/humancyc uses these) Java CI with Maven #46: Commit 59eab38 pushed by IgorRodchenkov
March 2, 2024 22:24 1m 31s master
master
March 2, 2024 22:24 1m 31s
Many changes/improvements: Java CI with Maven #45: Commit 0af152e pushed by IgorRodchenkov
February 21, 2024 02:37 1m 32s master
master
February 21, 2024 02:37 1m 32s
Fixed NPE bug in the Resolver.checkRegExp; Java CI with Maven #44: Commit 211f6cd pushed by IgorRodchenkov
February 12, 2024 19:20 42s master
master
February 12, 2024 19:20 42s
Logging and dependency mgmt polishing. Java CI with Maven #43: Commit 412bd0b pushed by IgorRodchenkov
February 10, 2024 19:26 1m 20s master
master
February 10, 2024 19:26 1m 20s
Logging: using slf4j/logback; removing log4j.properties, etc. Java CI with Maven #42: Commit afbf0e1 pushed by IgorRodchenkov
February 4, 2024 19:25 1m 4s master
master
February 4, 2024 19:25 1m 4s
Bumped some dependencies Java CI with Maven #41: Commit 44a1639 pushed by IgorRodchenkov
February 4, 2024 18:21 1m 28s master
master
February 4, 2024 18:21 1m 28s
Improved BioPAX I/O, unit tests, and logging more. Java CI with Maven #40: Commit 45eabe8 pushed by IgorRodchenkov
December 11, 2023 08:23 37s master
master
December 11, 2023 08:23 37s
Fixed BioPAX I/O bugs (work "inspired" by fresh humancyc data and old… Java CI with Maven #39: Commit 822783f pushed by IgorRodchenkov
December 10, 2023 05:40 43s master
master
December 10, 2023 05:40 43s
Re-wrote Paxtools summarize command to produce JSON output. Java CI with Maven #38: Commit 237582d pushed by IgorRodchenkov
December 3, 2023 19:03 1m 20s master
master
December 3, 2023 19:03 1m 20s
Upgraded Jena dependency; improved the enum typeOf methods (allows an… Java CI with Maven #37: Commit c56f1e2 pushed by IgorRodchenkov
October 9, 2023 23:19 1m 55s master
master
October 9, 2023 23:19 1m 55s