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Fix deprecation warning in tests
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tests/test_integration.py

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Original file line numberDiff line numberDiff line change
@@ -249,7 +249,7 @@ def test_seed(self):
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def test_log_coverage(self):
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self.run_command()
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original_coverage_data_path = os.path.join(tmp_basename_dir,'original_data_gt1000.csv')
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df = p.io.parsers.read_table(original_coverage_data_path,index_col=0,sep=',')
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df = p.io.parsers.read_csv(original_coverage_data_path,index_col=0,sep=',')
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true_pseudo_cov = -1.3143
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calc_pseudo_cov = df.sample_1[0]
@@ -258,7 +258,7 @@ def test_log_coverage(self):
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def test_log_coverage_no_cov_normalization(self):
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self.run_command(tags=["--no_cov_normalization"])
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original_coverage_data_path = os.path.join(tmp_basename_dir,'original_data_gt1000.csv')
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df = p.io.parsers.read_table(original_coverage_data_path,index_col=0,sep=',')
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df = p.io.parsers.read_csv(original_coverage_data_path,index_col=0,sep=',')
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true_pseudo_cov = -1.8107
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calc_pseudo_cov = df.sample_1[0]

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