diff --git a/avm-transpiler/Cargo.lock b/avm-transpiler/Cargo.lock
index 9c75f14da7d0..94ae512003de 100644
--- a/avm-transpiler/Cargo.lock
+++ b/avm-transpiler/Cargo.lock
@@ -7,7 +7,7 @@ name = "acir"
 version = "1.0.0-beta.7"
 dependencies = [
  "acir_field",
- "base64 0.21.7",
+ "base64 0.22.1",
  "bincode",
  "brillig",
  "color-eyre",
@@ -46,7 +46,7 @@ dependencies = [
  "acvm_blackbox_solver",
  "brillig_vm",
  "fxhash",
- "indexmap 1.9.3",
+ "indexmap 2.10.0",
  "serde",
  "thiserror",
  "tracing",
@@ -401,11 +401,22 @@ checksum = "597bb81c80a54b6a4381b23faba8d7774b144c94cbd1d6fe3f1329bd776554ab"
 
 [[package]]
 name = "bincode"
-version = "1.3.3"
+version = "2.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b1f45e9417d87227c7a56d22e471c6206462cba514c7590c09aff4cf6d1ddcad"
+checksum = "36eaf5d7b090263e8150820482d5d93cd964a81e4019913c972f4edcc6edb740"
 dependencies = [
+ "bincode_derive",
  "serde",
+ "unty",
+]
+
+[[package]]
+name = "bincode_derive"
+version = "2.0.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "bf95709a440f45e986983918d0e8a1f30a9b1df04918fc828670606804ac3c09"
+dependencies = [
+ "virtue",
 ]
 
 [[package]]
@@ -904,12 +915,6 @@ dependencies = [
  "subtle",
 ]
 
-[[package]]
-name = "fixedbitset"
-version = "0.4.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80"
-
 [[package]]
 name = "fixedbitset"
 version = "0.5.7"
@@ -941,6 +946,12 @@ version = "1.0.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1"
 
+[[package]]
+name = "foldhash"
+version = "0.1.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2"
+
 [[package]]
 name = "form_urlencoded"
 version = "1.2.1"
@@ -1011,6 +1022,8 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289"
 dependencies = [
  "allocator-api2",
+ "equivalent",
+ "foldhash",
 ]
 
 [[package]]
@@ -1242,9 +1255,9 @@ dependencies = [
 
 [[package]]
 name = "indexmap"
-version = "2.8.0"
+version = "2.10.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3954d50fe15b02142bf25d3b8bdadb634ec3948f103d04ffe3031bc8fe9d7058"
+checksum = "fe4cd85333e22411419a0bcae1297d25e58c9443848b11dc6a86fefe8c78a661"
 dependencies = [
  "equivalent",
  "hashbrown 0.15.2",
@@ -1406,7 +1419,7 @@ name = "noirc_errors"
 version = "1.0.0-beta.7"
 dependencies = [
  "acvm",
- "base64 0.21.7",
+ "base64 0.22.1",
  "codespan",
  "codespan-reporting",
  "flate2",
@@ -1436,7 +1449,7 @@ dependencies = [
  "num-bigint",
  "num-integer",
  "num-traits",
- "petgraph 0.6.5",
+ "petgraph 0.8.2",
  "rayon",
  "serde",
  "serde_json",
@@ -1463,7 +1476,7 @@ dependencies = [
  "noirc_printable_type",
  "num-bigint",
  "num-traits",
- "petgraph 0.6.5",
+ "petgraph 0.8.2",
  "rangemap",
  "rustc-hash",
  "serde",
@@ -1597,22 +1610,24 @@ checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e"
 
 [[package]]
 name = "petgraph"
-version = "0.6.5"
+version = "0.7.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b4c5cc86750666a3ed20bdaf5ca2a0344f9c67674cae0515bec2da16fbaa47db"
+checksum = "3672b37090dbd86368a4145bc067582552b29c27377cad4e0a306c97f9bd7772"
 dependencies = [
- "fixedbitset 0.4.2",
- "indexmap 2.8.0",
+ "fixedbitset",
+ "indexmap 2.10.0",
 ]
 
 [[package]]
 name = "petgraph"
-version = "0.7.1"
+version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3672b37090dbd86368a4145bc067582552b29c27377cad4e0a306c97f9bd7772"
+checksum = "54acf3a685220b533e437e264e4d932cfbdc4cc7ec0cd232ed73c08d03b8a7ca"
 dependencies = [
- "fixedbitset 0.5.7",
- "indexmap 2.8.0",
+ "fixedbitset",
+ "hashbrown 0.15.2",
+ "indexmap 2.10.0",
+ "serde",
 ]
 
 [[package]]
@@ -2032,7 +2047,7 @@ dependencies = [
  "chrono",
  "hex",
  "indexmap 1.9.3",
- "indexmap 2.8.0",
+ "indexmap 2.10.0",
  "serde",
  "serde_derive",
  "serde_json",
@@ -2332,7 +2347,7 @@ version = "0.19.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "1b5bb770da30e5cbfde35a2d7b9b8a2c4b8ef89548a7a6aeab5c9a576e3e7421"
 dependencies = [
- "indexmap 2.8.0",
+ "indexmap 2.10.0",
  "serde",
  "serde_spanned",
  "toml_datetime",
@@ -2345,7 +2360,7 @@ version = "0.22.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "17b4795ff5edd201c7cd6dca065ae59972ce77d1b80fa0a84d94950ece7d1474"
 dependencies = [
- "indexmap 2.8.0",
+ "indexmap 2.10.0",
  "toml_datetime",
  "winnow 0.7.10",
 ]
@@ -2427,6 +2442,12 @@ version = "0.9.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8ecb6da28b8a351d773b68d5825ac39017e680750f980f3a1a85cd8dd28a47c1"
 
+[[package]]
+name = "unty"
+version = "0.0.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6d49784317cd0d1ee7ec5c716dd598ec5b4483ea832a2dced265471cc0f690ae"
+
 [[package]]
 name = "ureq"
 version = "2.12.1"
@@ -2498,6 +2519,12 @@ version = "0.9.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f"
 
+[[package]]
+name = "virtue"
+version = "0.0.18"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "051eb1abcf10076295e815102942cc58f9d5e3b4560e46e53c21e8ff6f3af7b1"
+
 [[package]]
 name = "wasi"
 version = "0.11.0+wasi-snapshot-preview1"
diff --git a/noir/bootstrap.sh b/noir/bootstrap.sh
index 8c9bbb12bc8e..9109ea730396 100755
--- a/noir/bootstrap.sh
+++ b/noir/bootstrap.sh
@@ -231,7 +231,7 @@ function bump_noir_repo_ref {
   # Build nargo and run formatter on `noir-projects`
   build_native
   ../noir-projects/bootstrap.sh format
-  git add .
+  git add ../
   git commit -m "chore: Update noir-repo-ref to $ref" || true
   do_or_dryrun git push --set-upstream origin $branch
 }
diff --git a/noir/noir-repo-ref b/noir/noir-repo-ref
index 3941717aa8fc..025bab15be3b 100644
--- a/noir/noir-repo-ref
+++ b/noir/noir-repo-ref
@@ -1 +1 @@
-nightly-2025-07-02
+nightly-2025-07-04