diff --git a/appscale/tools/appscale.py b/appscale/tools/appscale.py
index a732d1f7..3632766a 100644
--- a/appscale/tools/appscale.py
+++ b/appscale/tools/appscale.py
@@ -868,4 +868,6 @@ def upgrade(self):
 
     options = ParseArgs(command, 'appscale-upgrade').args
     options.ips = yaml.safe_load(base64.b64decode(options.ips_layout))
+    options.terminate = False
+    options.clean = False
     AppScaleTools.upgrade(options)
diff --git a/appscale/tools/local_state.py b/appscale/tools/local_state.py
index 192db393..ba0bddfb 100644
--- a/appscale/tools/local_state.py
+++ b/appscale/tools/local_state.py
@@ -29,7 +29,7 @@
 
 
 # The version of the AppScale Tools we're running on.
-APPSCALE_VERSION = "3.3.0"
+APPSCALE_VERSION = "3.3.1"
 
 
 class LocalState(object):
diff --git a/setup.py b/setup.py
index 1acb3491..873b055b 100644
--- a/setup.py
+++ b/setup.py
@@ -33,7 +33,7 @@
 
 setup(
   name='appscale-tools',
-  version='3.3.0',
+  version='3.3.1',
   description='A set of command-line tools for interacting with AppScale',
   long_description=long_description,
   author='AppScale Systems, Inc.',