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Extract acquisition metadata from Zeiss czi files #36

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8 tasks

mekhlakapoor opened this issue Mar 22, 2024 · 0 comments

Open

8 tasks

Extract acquisition metadata from Zeiss czi files #36

mekhlakapoor opened this issue Mar 22, 2024 · 0 comments

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Contributor

mekhlakapoor commented Mar 22, 2024

User story

As a user, I want to automatically extract and generate acquisition metadata from the ZEISS, since this will be generated per session.

Acceptance criteria

Given .czi file, extract metadata to schema
Given extracted metadata, map it to aind-data-schema Acquisition model

Sprint Ready Checklist

1. Acceptance criteria defined
2. Team understands acceptance criteria
3. Team has defined solution / steps to satisfy acceptance criteria
4. Acceptance criteria is verifiable / testable
5. External / 3rd Party dependencies identified
6. Ticket is prioritized and sized

Notes

https://github.com/sebi06/czitools
https://forum.image.sc/t/extract-creation-date-from-czi-file-metadata/41145

dyf self-assigned this

Sun-flow mentioned this issue

Feat 36 bump version pins #87

Closed

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