Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

703880_2024-04-15 units missing files #94

Open
bjhardcastle opened this issue Apr 29, 2024 · 0 comments
Open

703880_2024-04-15 units missing files #94

bjhardcastle opened this issue Apr 29, 2024 · 0 comments

Comments

@bjhardcastle
Copy link
Member

Traceback (most recent call last):
  File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 269, in make_units_table_from_spike_interface_ks25
    _ = future.result()
  File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 439, in result
    return self.__get_result()
  File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
    raise self._exception
  File "/opt/conda/lib/python3.9/concurrent/futures/thread.py", line 58, in run
    result = self.fn(*self.args, **self.kwargs)
  File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 188, in _device_helper
    df_device_metrics["default_qc"] = spike_interface_data.default_qc(
  File "/opt/conda/lib/python3.9/site-packages/npc_ephys/spikeinterface.py", line 400, in default_qc
    self.get_correct_path(
  File "/opt/conda/lib/python3.9/site-packages/npc_ephys/spikeinterface.py", line 141, in get_correct_path
    path = npc_io.from_pathlike("/".join(str(path) for path in path_components))
  File "/opt/conda/lib/python3.9/site-packages/npc_io/file_io.py", line 65, in from_pathlike
    raise FileNotFoundError(
FileNotFoundError: In attempting to handle a path containing '#', we couldn't find s3://codeocean-s3datasetsbucket-1u41qdg42ur9/0f98e9eb-0fb9-4a9e-9bf5-51f28b7ef8a7/curated/experiment1_Record Node 103#Neuropix-PXI-100.ProbeC-AP_recording1/properties/default_qc.npy

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 90, in <module>
    main()
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 86, in main
    write_sessions_to_cache(**kwargs)  # type: ignore[misc, arg-type]
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 75, in write_sessions_to_cache
    helper(
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 27, in helper
    npc_sessions.write_and_upload_session_nwb(
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/utils/cache.py", line 192, in write_and_upload_session_nwb
    path = session.write_nwb_zarr(path=path, metadata_only=metadata_only)
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 369, in write_nwb_zarr
    nwb = self.nwb if not metadata_only else self.metadata
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 332, in nwb
    analysis=self._analysis,
  File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
    val = self.func(instance)
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 750, in _analysis
    modules.append(self.all_spike_histograms)
  File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
    val = self.func(instance)
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 2632, in all_spike_histograms
    for probe in sorted(set(self.units.electrode_group_name[:])):
  File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
    val = self.func(instance)
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 1429, in units
    for column in self._units.columns:
  File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
    val = self.func(instance)
  File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 1368, in _units
    units=npc_ephys.make_units_table_from_spike_interface_ks25(
  File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 280, in make_units_table_from_spike_interface_ks25
    raise RuntimeError(
RuntimeError: Error fetching units for 703880_2024-04-15 - see original exception above/below
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant